Varibaculum cambriense: CYK25_001640
Help
Entry
CYK25_001640 CDS
T09090
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vcb
Varibaculum cambriense
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcb03019
]
CYK25_001640 (hrpA)
Enzymes [BR:
vcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CYK25_001640 (hrpA)
Messenger RNA biogenesis [BR:
vcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CYK25_001640 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_19
AAA_22
NACHT
T2SSE
nSTAND3
AAA_30
PROL5-SMR
SLFN-g3_helicase
AAA_25
AAA_16
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
WIK88933
LinkDB
All DBs
Position
complement(369756..374552)
Genome browser
AA seq
1598 aa
AA seq
DB search
MSGQQAASGQNQRAERRHNPRKKSSPPAHRRTKALNNPPAKINFPEELPVSARRQEIAEA
IANHQVVVVSGETGSGKTTQLPKICLEIGRGRGALIGHTQPRRIAARSVATRIAHELGED
LGKTIGFQVRFTDVVSSKTMVKLMTDGILLAEIRTDPLLKRYDTIIVDEAHERSLNIDFI
LGYLARLLPRRPDLKVIITSATIDSQRFAEHFSRPGFPVPIIEVSGRTYPVQVRYRPLDG
SDSTDEDEEGDEESFEENRKHLPRQQKEGAARGETKDQTEGICQAVEELFACGRGDILVF
LPGERDIRDTEAALAAHLGQRYVRVGERSNTPGAVEILPLFARLSPAEQQRVFAPHPYPR
IVLATNVAETSLTVPGIKYVIDPGLARISRYSQRTKVQRLPIEEVSQASARQRAGRCGRI
SDGICIRLYSEENFLARPRFTEPEILRTSLAAVILAMASLNLGKVADFPFIDAPDPRQVR
DGEQLLYELGALSERGENTAGYRLTKLGKRLAKLPIDPRLARMLLEADRRGCVSEALVIV
SALSMQDVRLRPLEHQEAADQAHSRFLDPSSDFLTYLNLWRYLRTQSRDLSGSAFRRMCQ
REFLHYLRTREWQDLTGQLRQLLKELGISARPLAKPSRSTYQIDPESRELIVACQNLTSK
YSDTDAIHRSLLVGMLSGIGNWDQRAKQYLAPRGARFTIWPGSGLSNRTFDWVMAAELVE
TSRLFARNVARVNPDWIIHAGKHLVKRSYGEPYWSSRKGTALVPERVTLYGLTIAADVPV
PLSRLGNKAMPALSPAVSKLDLPGEQSPQTAREWARALFIANALVRGDAPLNYPFLKRNE
KMLERAREVEQRTRQAGMVAGEDALAAFFAARLGREVTNPGTFAAWFKRQDDPHILDYPE
DVVLTPTATQKAPRNYSSGKAADHSIGGRTDLAGKLTRLSRAGFPDRWVGADFSLPLQYH
FAPGKEEDGITCQVSLEQLPYLNPQEFQWTVPGLWPQLFTALIRALPKTVRRQLVPAPQV
AAEVSAWIERELANPAAPAGAAESREPTPVQIKQEEALQASLGRLAVWAGIEKSNNNPST
SENQPKVPGNAGGTKNVDPNPAESTEQGGNGHSPGAGAPQATATTAPDTSKQPSHRNQAD
AARKKQLTAPSRPLASLFIAALDQLRAVEVTEQDFSQAVTALPAHLRIRFALHVGKEQIY
SRDLEKLQRRYGKKGRAARKQVIRDALSQVSKAESGKKNSAPSKTTRSSSKGTNGDGQHF
PETDFSPSWPQVRGKTAVLPTQITTTAGGIPGQAFPGLLPQRLPRPFGLSLLSGPQKNRY
ENPRSAKKNSEASNQMDSSSPTFPVRVARFENLAQAQRSHHFGVTYLLCSQLCLPPGRIS
SRWPAHLALNLAALPYEKAALLADLQLVATWRCLDQAKVDTWTVRDSSTLRQLATDFRDR
FEDEVYSLARETGEIGGSYREVSAALSGHFPLSALGEVTQVRSQLSQIIYPGFLWDLCEG
AEDLGRYLQAIVTRLQKASQGQNSGSHQEEQALAIWEGAREKVANQENLAANPAAVAALI
HGRWLVEELRVSLFAQPLGTRERVSLKRLSKLLKEAQV
NT seq
4797 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcagcaggcagctagcgggcagaatcagcgggctgagcgacgccacaacccg
cgcaaaaaaagtagccctccagctcaccgccgcacaaaagccttaaataaccctcctgca
aagatcaactttcccgaggaacttccggttagtgcgcggcggcaagaaatcgccgaagct
atcgccaaccaccaggtggtagtagtttccggggaaactggttctgggaaaactacgcag
ttgccaaaaatctgtttagagataggcagaggacgcggcgccctcatcggacacacccag
ccgcgccggatagctgcccgctcagtggctacccggatagcccacgagctgggagaagac
ctggggaagaccatcgggttccaggtgcgattcactgatgtggtctctagtaaaaccatg
gtcaagttaatgacggatgggattttactagcggaaatccgcaccgatcccctgctgaaa
cggtatgacactatcatcgtggatgaagcccacgaacgctccctgaatattgatttcatt
ttggggtatttggcgcgcttgctgccccgccgccccgatctgaaagtcattattacctcg
gcaactattgattcccagcgttttgccgagcatttttcccgccccggtttccccgttccg
attattgaagtttcgggacgcacctacccggttcaggtgcgctaccgccccctggatggc
tccgatagcacggatgaggacgaagagggcgatgaggaatccttcgaagaaaaccgtaag
cacctcccgcgccagcaaaaagagggagccgcccgcggtgaaacaaaagaccagaccgag
gggatctgccaggcagttgaggaactctttgcttgcggtcgcggcgatattttggtgttt
ttgccaggcgagcgggatattcgggacaccgaggccgccctcgccgcgcatctaggtcag
cggtacgtgcgcgttggggaacgctcaaacaccccgggagcagtagaaatcttgccgcta
tttgcccggctatccccggcggaacagcaacgagtcttcgccccgcacccttatccgcga
atcgtgctcgccaccaatgtggcagaaacttccctaaccgtgccgggcataaagtatgtg
attgatcctggtctggcgcggatttcgcgttattcgcagcgcaccaaagtgcagcgcctg
ccgattgaagaagtttcccaagccagtgcccgacagcgagcggggcgttgtgggcggatt
agtgacgggatttgtatccggctgtattcggaagagaatttcctggcacgtccccgtttt
actgaacccgagattttacgaacctccttggcggcagtgattttggcgatggcctcgtta
aacctggggaaagtcgccgattttccctttatcgatgcgccggatccgcggcaagtccgg
gacggggaacagctgctttacgaactgggtgctctttcggagcggggcgaaaacacagcg
ggttaccgcctcaccaagctgggcaaacgcctagcgaagctgccgattgatccgcgtctg
gcgcggatgctgctagaggctgaccggcgcggctgcgtatcggaggcgctagtaatagtt
tccgcgctttcgatgcaagatgtacgtctgcgacccttagaacaccaggaagccgctgat
caagctcattcgcgtttcctggaccccagctccgatttcttgacttacctgaatctttgg
cgctacctgcgcacccaatcccgcgatctatccgggagtgcttttcggagaatgtgtcag
cgcgaatttctgcattacctgcgtactcgggaatggcaagatctcaccggccaactgcgg
caactattaaaagagctgggaattagcgcacgtcccttggcgaaaccgtcccgctccacc
taccagatagatccggagtctcgcgagctaattgtggcctgccaaaacctcacctcaaaa
tattctgacacggatgctattcatcggtccctactggtgggaatgctttcggggattggc
aactgggatcagcgcgccaaacagtacctggctccgcgcggcgctcgcttcaccatctgg
ccaggttcggggctctctaaccgcacattcgattgggtaatggctgcggaactggtagaa
acctcccggctttttgcccgcaatgtggcccgggttaaccccgattggattattcacgcc
gggaaacacctggtgaaacgctcctatggggagccgtattggtcaagtaggaaaggcaca
gcgctagtgccggaacgggttaccctctacgggctcacgattgccgcggacgtgccggtg
cctctgtctcggctgggaaataaagcaatgccggcgctatctcctgcggtcagtaagctg
gatctgcctggcgagcaaagcccgcaaaccgctcgggagtgggcgcgcgccctctttatt
gctaacgccctggtcaggggggatgcccccttgaattatcccttcttgaaacgcaatgaa
aagatgctggagcgtgcccgggaagttgagcaacgcacccgccaggccggaatggtggcc
ggcgaggacgctttggcggcctttttcgctgcccgcttgggtagagaggtaaccaatccg
ggaactttcgcggcctggtttaaacgtcaagatgacccccatatattggattaccccgaa
gacgtggtgctcaccccaacagccacccaaaaagcgccccgcaactattccagtggtaaa
gccgcggatcattcgattgggggcagaactgatttggcgggcaaacttacccggctctct
cgcgccggattccccgaccgctgggtaggggcagattttagtttgcccctgcagtatcac
tttgccccgggcaaggaagaagatgggatcacctgccaggttagcttagagcagttgccg
taccttaatccgcaagagtttcaatggacagtcccggggctctggccgcagctgttcacc
gcgctgatccgggcattaccgaaaacggtgcgccgccagttggtgcctgccccgcaggtg
gcggcggaagttagcgcgtggattgagcgtgaactggccaatcccgcggctcctgctggc
gctgccgaaagccgcgagcctaccccggtacagattaagcaagaggaagcgttgcaggct
tccctgggacgcttagccgtttgggcggggattgaaaaaagtaataataacccgtctacc
agtgaaaatcagcctaaagttccggggaatgcaggcggcacaaagaacgtagatccaaac
cctgcggagagcacagaacagggaggaaacgggcactcgccaggggcaggcgccccccaa
gccactgcaaccacagcgccggatacctctaaacagcctagccaccgcaaccaagcagac
gccgcaaggaaaaagcagttaaccgccccctcgcggccactggcttcgctgtttatcgcg
gctctcgaccaactgcgcgccgtggaagtaaccgagcaagacttttcccaggcggtcacg
gctttgcccgcgcatttgcgaattcgctttgcacttcacgtggggaaagaacagatatat
tctcgcgacctcgaaaaactgcagagacgttacggaaagaaaggacgcgccgcccgcaag
caagtaattcgtgacgcgctttcgcaggtgagtaaagccgaaagcggaaagaagaactcg
gcaccttcgaaaaccacccggagcagcagtaaaggcactaatggcgatgggcagcatttc
ccggaaacagacttttctccttcctggccgcaggtacgcggaaaaacggcagttttacct
actcaaataaccactactgccggcgggatacccggacaagccttcccaggcttactgccg
caacgcctgccgcgccccttcggattatcactactgtcgggtccgcaaaaaaaccgctac
gaaaacccgcgttccgccaagaaaaatagcgaagcaagcaatcagatggattcaagctcc
cctactttcccggtgcgagtggcgcgctttgaaaacttagcgcaagctcaacgctcccac
catttcggggttacctacctgctttgctcccagctctgcctgccccctggacggatttct
agtcgttggccagcgcatttagcgctaaacctggcggcactgccctacgaaaaagccgct
ttgctcgcagatctgcagctggtagccacctggcgttgcctagaccaagcaaaagtcgat
acctggacagttcgagattcttcgaccctgcggcagctggctacagatttccgcgaccgt
ttcgaggacgaggtttacagcctcgcccgcgaaactggggagatcggtggcagctaccga
gaggtatcagccgcgctatctgggcatttcccgctcagcgctttaggggaagttacccag
gtgcgctcccagctatcgcagattatctacccgggattcctgtgggatttatgcgaggga
gccgaagatttagggcgttacctacaggcgatagttacccgcctccaaaaggcaagccag
ggacaaaacagcgggagccaccaggaggaacaggctttagctatttgggagggcgcgcgc
gaaaaagtagcaaaccaggaaaatctagctgcaaatcctgctgccgtagctgccctaatc
catgggcgctggctagtggaagaactgcgggtttcgctatttgcccagcccttgggtacg
cgggagcgggtttccctcaagcgcctgagcaagctcctaaaagaggcgcaagtctaa
DBGET
integrated database retrieval system
