Varibaculum cambriense: CYK25_002190
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Entry
CYK25_002190 CDS
T09090
Symbol
rfbC
Name
(GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase
KO
K01790
dTDP-4-dehydrorhamnose 3,5-epimerase [EC:
5.1.3.13
]
Organism
vcb
Varibaculum cambriense
Pathway
vcb00521
Streptomycin biosynthesis
vcb00523
Polyketide sugar unit biosynthesis
vcb00541
Biosynthesis of various nucleotide sugars
vcb01100
Metabolic pathways
vcb01110
Biosynthesis of secondary metabolites
vcb01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
CYK25_002190 (rfbC)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
CYK25_002190 (rfbC)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
CYK25_002190 (rfbC)
Enzymes [BR:
vcb01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase
CYK25_002190 (rfbC)
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Motif
Pfam:
dTDP_sugar_isom
Motif
Other DBs
NCBI-ProteinID:
WIK89031
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All DBs
Position
complement(485131..485700)
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AA seq
189 aa
AA seq
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MVEIIPATKQKTDIDGLFVIYPKQVTDERGTIRELFRRSWLAENDIPTVFEQCNNTLTHH
GAVRGLHAEAMTKLVTVVTGEVFGAYVDIRPGSPTFGAVVTVEITPGVMVLVPQGVCNGF
QAVSPGNSEYLYFFTDEWQPGMPGGALTPLDPELGIEWPVKIDPEDRLQISQKDFDAPRL
SDVRAGLSD
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaattattccggcaactaaacaaaaaaccgatatcgacggactcttcgtaatt
tatccaaaacaggttacagatgagaggggcactattcgagagcttttccgccgttcctgg
ttggccgaaaatgatattcctacggtttttgaacaatgtaacaacactcttacccaccat
ggcgcagtgcgagggctacatgcagaagcaatgaccaaactggtgacggtagttaccggt
gaagtatttggagcatacgtagatattcgccctggatcaccaacttttggcgcagtggta
accgtggagattactcccggggtgatggtgttggttccccaaggcgtttgcaatggtttt
caagctgtttcccccggaaacagcgaatatctttatttctttaccgatgaatggcagccg
ggtatgccgggaggggctctgactcctcttgatccagaacttggtattgaatggccagtg
aagattgaccccgaggatcggttgcagatttcgcagaaggatttcgatgctccccgcctt
agcgacgtgcgagctggtctaagcgactaa
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