Varibaculum cambriense: CYK25_002200
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Entry
CYK25_002200 CDS
T09090
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
vcb
Varibaculum cambriense
Pathway
vcb00521
Streptomycin biosynthesis
vcb00523
Polyketide sugar unit biosynthesis
vcb00525
Acarbose and validamycin biosynthesis
vcb00541
Biosynthesis of various nucleotide sugars
vcb01100
Metabolic pathways
vcb01110
Biosynthesis of secondary metabolites
vcb01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
CYK25_002200 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
CYK25_002200 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
CYK25_002200 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
CYK25_002200 (rfbB)
00525 Acarbose and validamycin biosynthesis
CYK25_002200 (rfbB)
Enzymes [BR:
vcb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
CYK25_002200 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
NAD_binding_10
adh_short
NmrA
Sacchrp_dh_NADP
DapB_N
Motif
Other DBs
NCBI-ProteinID:
WIK89033
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All DBs
Position
complement(486989..487981)
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AA seq
330 aa
AA seq
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MKVLVTGGAGFIGANFVHTTIETMPEAEVTVLDKLTYAGNPDSIAGLERTTLVQGDVADA
DTVDSLVAEADVVVHFAAESHNDNSLRNPWPFISTNIVGTYQLLEAVRRHGTRYHHISTD
EVYGDLEIGEPRKFKPGDPYIPSSPYSASKASSDHLVHAWVRSFGVAATISNCSNNYGPY
QHIEKFIPRTITNLFDGIKPRVYGTGEQIRDWIHVYDHNTAVWEIINKGTIGETYLIGAN
GEKTNLEVTKMILQEFGLDPNDFDHVNDRPGHDQRYAIDNSKLVEELGWQPKYTDFSEGL
RNTIDWYRAHEDWWRHQKSEIEAAYRKQGQ
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagtactcgtaactggcggagcaggattcattggcgctaattttgtgcacaccact
attgaaactatgcccgaggccgaggtaaccgtcctcgacaaactcacctacgcgggaaat
cccgacagtattgcgggacttgaacgtaccaccttagtgcagggagatgtagctgacgct
gacaccgttgattctctagttgcggaagcagatgtagtggttcactttgccgctgaatcc
cataacgataattctctacgtaatccttggcccttcatctccaccaatatcgtgggcact
tatcaactacttgaggcagtgcgccgccacggaactcgttatcaccatatttctactgat
gaagtctatggcgatctggaaattggcgagccgcgtaaattcaagcctggcgacccctat
attccctcctccccctattccgcttccaaagcttcctcggatcatttggtacacgcctgg
gtacgctctttcggggtagcagccacgatctctaattgctcaaataactatggcccatac
cagcacatcgaaaagtttattccccgtaccattaccaaccttttcgatgggattaaaccg
cgagtttatggcacaggcgaacagattcgcgattggattcatgtatatgaccacaacact
gcggtttgggaaattataaacaagggtactatcggtgaaacctatcttatcggcgccaat
ggagaaaaaactaacctggaagtcaccaagatgattttgcaggagttcgggctagatcct
aacgatttcgatcacgtcaacgatcggccagggcacgaccagcgctacgcgattgacaac
tccaaactagtggaagaactgggatggcagccgaaatatactgattttagcgaggggcta
cgcaatactatcgactggtatcgagcgcatgaggactggtggcgtcaccagaaatcggag
atcgaagctgcataccgcaaacaaggccagtag
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