Varibaculum cambriense: CYK25_002320
Help
Entry
CYK25_002320 CDS
T09090
Name
(GenBank) leucine-rich repeat protein
Organism
vcb
Varibaculum cambriense
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_5
Bact_surface_Ig-like
DUF4738
Motif
Other DBs
NCBI-ProteinID:
WIK89053
LinkDB
All DBs
Position
521126..526054
Genome browser
AA seq
1642 aa
AA seq
DB search
MASKALSRRLVASLSVLGLLLSSLLVIVPMTAPAAEQPNTTNPTSTSTTNSTNSNSAKPA
VNSTKPSPSTSGKSATASQAAPFNFQDPSAGVPQSLRSPIPMRGGVPSDPRFTYNGTEIT
GLTDAGKTDLQNNHELAIPDGTTKIAADVFSGLKLTKVTLPASVTEVGDRAFYDNSITDL
VAPGLETIGEGAFQKNQLTTFTSDTIISIGEGAFSDNQLTKVNITDARPDDPQNPPQRLT
IISANAFRDNKLTEVTLPKYVTEIGASAFANNQLSGIAFPPNLEKVGQEAFSGNQIKEVK
IPATITTFGKEVFSNNKRWVVLEKADEHTPLPTAVKSEKYASGFGQVAAEDAVSITIKYV
DAETKKPLRSQQVLQSEFTEPDGVYFAGKENTIKAPRLAGYAVTPTSQKITPKSGEENAV
TFTYKKTDFSPKISGEINKHIPHRGDGSTEALLKDVTAVDTYGNVITEKLKVSPKTIDTN
VQEATYDVYYTVTDSQGRTKTVKGKVAVGPDWPEKTICAGWQVKDFTYNGGTISGFSRDG
NQKHMAGKTKDPWCWPTFGDKGQPITAIGDNAFSDMYPSLSRIPDSWGSITSIGNRAFAS
SSFTEMPKSWDKVSKIGDSAFASSRLTALPKSWGKVTSIGESAFNANSNLSEIPDSWGSV
KAIGKNAFRGGALTRLPDSWGLLTEINEGVFGANKLQSLPKSWENITSIGKEAFFSNTNL
TALPDSWGNVSQIGETAFYNCGLTSLPNSWGKITTLPRYAFKENKLVSLPDWGPITSVGQ
EVFRHNQLTELPESWENVSQLGVGAFQDNKLKAVPDSWGKLTRLPKDVFENNEITSLHSL
GSITSIGESAFKNNEITSLHSWGSVTTIGKSAFEKNKLVKLPDSWENVSRLDTSSFASNL
LTSLPDSWGKITTIPERAFYDNQLAALPAWGAVTTIGQSAFVRNNLTVLPPQWDSVTTIG
ECAFAGKSTYKYFNVNSDNLPSCSGGDANAANNNQIQALPDSWGQVKTIKGRAFLGNALT
GLPDSWGSVTTIGAESFKDNKLTALTAPWDNFTEIPTGAFINNEITTLPSSWGKITLINR
HAFESNRIKALPASWGAVTAIKYSAFVNNALTALPDSWENVESVGAYWIYSMYGGRENYA
GTFGNVTDSFSKNKEIDREKGKNNITTLPNSLGKINDFGQYTFGGTVPAGQVFTVPDTPV
DQSNPSGDPTYKPPRNRLDLAVRILGAKDLYLDTYVGLKAPIYLRPESGKNPLNIEGIPG
VIIILVDNKVNVQYLGPNGETVAPSESRVISTKDSNGENKYLLQPPMVKGYSLPQPQWID
LDGNDKNIVFRYQKAPAELTGFYARLNLTGKINQPGWPESNDLEEQFGNNMRVDLAYGGD
AGTSIVKDGVIRVTYDPTRVEVADWDNTSSQYFQSVKVVAPGVLEVKLKPNYDSSIRTSI
PIYWRIKKRITASDAVFPLKAELLDKASDGNRYVLTPHPKSKPGPVNLKGYYPLPTFTKD
TVGCDLGVCRDYDDDPEGHVSRYGNNAVTFTFAVEKLMRNVRGYTITDQLPLYIKTDGTQ
ARAKFVASENPGWKLGDDQVTLTYTNTEKRLTTESSGLGSLKLHFPGAKKQKRIDNTAEF
TLTPEEQGAEGTANYGGGEHSL
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
gtggcaagtaaggcgcttagcagaaggctggttgcttcgctatctgttttggggttgttg
ttatcgtctttgctggtaatcgtgccgatgacagcgcccgcagcagagcaaccaaatacc
actaaccccacttccaccagtactactaactccactaatagcaactccgcaaagcctgct
gtcaactccactaaacctagcccgtccacatcaggaaaatccgcaaccgctagccaagca
gccccctttaacttccaggatccaagcgccggggtgccgcaatcgctgcgtagcccaatt
ccgatgcgggggggggtgccgtctgatcctcgtttcacttacaacggaacggaaatcacc
ggtctgaccgatgccggtaaaactgatctgcaaaataatcacgaactggccatccccgat
ggcaccaccaagattgcggcggacgtattttcggggctgaaactcactaaggtcaccctg
ccggcttcagttacagaggtaggcgaccgcgccttttacgataattcgattacggatctg
gtggcgccggggctagaaactattggcgagggcgcgttccagaagaaccagctaactact
ttcacttcggatacgataatcagtattggcgagggcgcatttagcgataaccagttaacc
aaggtgaatatcaccgacgctcgcccggatgatccgcaaaacccgccccagcggctaacc
attatttcagcgaacgccttccgtgacaataaactaactgaggtcaccctgccgaagtat
gtgaccgagatcggcgctagtgccttcgcaaataaccagctatcgggaatcgcgtttccg
cccaatctcgaaaaggtgggtcaggaagcgtttagcggcaaccaaatcaaagaagtaaag
attcctgcgactatcaccacctttggcaaggaagttttttcgaataataagcgctgggtc
gtgctagaaaaggcggacgagcatactccgcttccgaccgcagtaaagtccgaaaagtat
gcttccgggtttggtcaggtggctgcggaggacgcggtctcgattaccatcaaatatgtc
gatgcagaaacaaaaaagcccctgcgcagccagcaggtgctacaaagtgagttcaccgaa
ccggacggggtttatttcgcgggcaaagaaaacactattaaggcaccgcgcctggctggc
tatgcggtgaccccgacctcccaaaagattaccccgaagtccggggaggaaaatgcggtt
acgtttacctataagaaaaccgatttttcgcccaagattagcggggagattaataagcat
attccgcatcgtggtgacggttccacagaagctttattgaaggatgtgaccgcggtagat
acttacggcaatgttattactgaaaagctaaaggtttctccgaaaacaattgatactaat
gtgcaagaggccacctacgatgtctactacacggtcactgattctcaggggcgcactaaa
accgttaaaggcaaggtggcagtcggtccggattggccagagaaaaccatttgcgcaggt
tggcaggtaaaagatttcacctacaacgggggaaccattagcgggttcagccgtgacggt
aatcaaaagcatatggcagggaagaccaaggatccctggtgctggccaactttcggggac
aagggacaacccattaccgcgatcggcgataatgctttttcagatatgtacccttcgctg
tcccggattccggattcatggggttctatcaccagcatcggcaaccgggcgtttgcatct
agcagcttcaccgagatgcctaaatcatgggacaaagtctctaagattggcgattctgcc
tttgcaagttcccgacttacggctcttcctaagtcttggggcaaagttacctcgattggt
gaatcagcctttaacgcaaacagtaatctgagtgaaatcccagattcctggggttctgtc
aaagctattgggaaaaatgctttcagaggtggcgccttgacccggcttccggattcttgg
ggcttgctcactgagatcaatgagggggttttcggtgcgaataagttgcaatcactacca
aaatcctgggaaaatatcacctcaatcggcaaagaggcatttttctcaaacacaaatctg
acggcgcttccagattcttggggaaatgtttctcagatcggagagacagccttttataat
tgcgggctaacctccttgcctaattcctggggtaaaattactactttacccaggtatgca
tttaaggaaaacaagctagtctcgctgcccgattgggggccgattaccagcgtaggtcaa
gaggtatttaggcataaccagttaacggaattgccggagtcttgggagaatgtatcgcaa
ctgggggtaggggcttttcaagataataagcttaaggccgtacccgactcttggggcaag
ctcactaggctgccaaaggacgtatttgagaacaacgaaataacctcgctgcattccctg
gggtcgattaccagcattggggaatctgcatttaagaacaacgaaataacctcgctgcat
tcctggggatcggttaccaccattgggaaatctgcatttgagaaaaacaagctagttaaa
ctcccagattcctgggaaaacgtgtctcggctagacacgagtagttttgcttctaacctg
ttaacttctttgccggattcctggggaaagatcactactattccggaacgggctttctac
gataaccagctggctgcgctgcccgcctggggagcggtcaccactattggtcagagcgct
ttcgtgcgaaataacctgacggtgcttcctccacaatgggacagcgtgaccactattggg
gaatgtgcttttgcaggtaagtctacctacaagtatttcaacgtaaactcggacaattta
cctagctgctctggtggcgatgctaacgcagctaataataaccagatacaggcgctgccg
gactcctggggacaggtgaaaactattaaagggcgggcgttcttgggtaatgccctcacc
ggtctgccagattcgtggggaagcgttaccaccattggcgcggagagtttcaaagacaat
aagcttaccgccctgacggctccctgggataatttcaccgaaattcccacaggcgcattc
atcaataatgaaatcactactctccctagctcctggggcaagatcaccctcatcaatagg
catgcttttgaatcgaaccggataaaggcgttacccgcttcctggggtgcggtaacagca
ataaaatattcggcgtttgtaaacaatgctctcacagctctcccggattcctgggaaaac
gtagagtctgtaggtgcttactggatttactctatgtatggagggcgcgagaactacgcc
ggtacttttgggaatgtaaccgacagtttcagcaagaacaaggaaatagaccgagaaaaa
gggaagaacaatataactactcttccgaattctttggggaaaataaatgattttggacag
tatacctttgggggaacggttcccgccggtcaggtatttacagttcctgacaccccagtg
gatcagagtaatccgtcgggcgatccaacgtataagccgccccggaaccgcttagatctt
gcggtaaggatacttggggcgaaagatttatacctcgacacctatgtgggtcttaaagcc
cccatctacttgcggccagaatcaggcaagaaccccctgaatatcgagggtatacctggg
gtgattatcatcctggtggacaataaagtcaatgtgcaatacctcggccccaacggcgag
acggtagctcccagcgaaagccgggtaatcagcaccaaagacagcaatggcgaaaataag
tacttgctgcagccgccgatggtcaagggatactctctgccgcaaccgcaatggattgac
ctggacggcaacgacaaaaatatagttttccgttaccagaaggctcctgccgagttgacg
ggtttttacgcgcgtttgaatttgaccgggaaaataaaccagccaggctggcccgagtcg
aatgatctagaggagcagttcggcaataatatgcgagttgacctcgcctacggtggggat
gccggaacctcgatagttaaggatggggtcattcgggtaacttatgatcctacccgggta
gaagttgcggattgggataatacttccagccaatacttccaatcagttaaggtagttgcc
ccaggagtcctggaagttaagctgaagccgaattacgatagctccatacgaacaagtatt
cctatctactggcgtataaagaagcggattaccgcctcggacgcggttttcccgcttaag
gccgaattgctagataaagcctcggacgggaatcggtatgtgcttaccccgcatccaaaa
tctaaaccgggcccggtgaaccttaaaggctactatccgctgcctactttcacgaaggat
acagttggatgtgatcttggcgtatgtagggactacgatgatgatccagaagggcacgta
agcagatacggaaataacgcggtcacctttactttcgcagtagagaaattgatgcggaac
gtgcggggttacaccatcaccgaccagttgccgctatacatcaagactgatggtacccag
gcacgtgccaagttcgtagcctctgaaaacccggggtggaagctaggtgacgatcaggtc
accctcacctacaccaataccgaaaaacgtctgaccacggagagctccggtctaggtagc
ttgaagttgcatttcccgggggcaaagaaacaaaaacggattgataacaccgcggaattt
accctcacccccgaggagcaaggtgccgaaggaaccgctaattacgggggcggcgaacac
tcactttag
DBGET
integrated database retrieval system