Varibaculum cambriense: CYK25_003220
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Entry
CYK25_003220 CDS
T09090
Name
(GenBank) DNA topoisomerase IV subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
vcb
Varibaculum cambriense
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcb03032
]
CYK25_003220
03400 DNA repair and recombination proteins [BR:
vcb03400
]
CYK25_003220
Enzymes [BR:
vcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
CYK25_003220
DNA replication proteins [BR:
vcb03032
]
Prokaryotic type
DNA Topoisomerases
CYK25_003220
DNA repair and recombination proteins [BR:
vcb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CYK25_003220
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
WIK89592
LinkDB
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Position
complement(714976..717345)
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AA seq
789 aa
AA seq
DB search
MRTSFLEYAYSVIYARALPDARDGLKPVQRRIVYMMSEMGLWPNKGHVKSSRVVGEVMGK
LHPHGDSAIYDAIVRLAQDFNLRMPLVDGHGNFGSLDDGPAAARYTEVRMAPTAQDMVAN
LDEDVVDFVPNYDNQFLQPAVLPAAFPNLLVNGANGIAVGMATYIAPHNLGETVAGAIHL
LENPEATTEDLMRFIPGPDLPGGGIIVGLDGIRQAYETGRGIFRTRAKTSIERVSARKMG
IVVTELPYMVGSEKVIEKIKDGVQKGRLKGISAVTNLTDREHDLRLVIEVKSGFNPEAVR
ASLFKHTPMEDSFGINAVALVDGQPRTLGLKEMLQVFLDHRMEIVMRRSQYRLRKRQERL
HLVRGLLIAVLDIDDVIQIIRASEDSAQAKSRLMEAFDLDEVQAEHILSLQLRRLTKFSR
LELEAERDRLTAEIAELEALIASREKRQELVASELREVAQKRSDPRRTVLLEEEGAAELT
ADQDTPLEIPDEPATVVLGAGGLVARFPGHEALSTDQGREPWDTIISTALTTARGQVGAV
TSHGTLYKLTALEVPALVRSAAAPSLRGTPPISRLLNLEDGEEVVGLVPLDEDGPTWWAA
TAGGVIKRIRPQVLATQDSYSIITLDSGDQVVAAGSGSDDGAFVLISSAAQLLRTPADKV
RPQGRTGQGISGMKLSEGDQVIAAALTSTDALESSLVVTVAGIATSEAGSGQTSAKVTPL
LQYPQKGRAGQGVRCQRFLKGESRLALAAITATPPRALSKDGSPLSLPAQTDKRDASGSG
LKRQIYFLG
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacttccttcctggagtacgcctattcggtgatttatgcgcgtgccctgccagat
gcccgggatggtttaaagccggtgcagcgacgcatcgtttatatgatgagcgaaatgggg
ctctggcctaataaagggcacgtgaaaagctcccgcgtggtgggggaagttatgggtaag
ctccaccctcacggggacagcgccatctatgacgcgattgtgcgcctggcacaagacttt
aacctgcggatgccgctggtagatgggcatgggaacttcggttctctagatgacggtccg
gccgcggcgcgctacacggaagtgcggatggctccgaccgcccaagatatggtggccaat
ctggatgaggacgtcgtagattttgtgcccaactacgataatcagttcctgcagccagca
gtgctgcccgcggcgtttccgaatctattggttaacggcgccaacggaattgccgtggga
atggccacctatatagctccccacaacctgggagaaaccgtggccggcgcgattcatctg
ctagaaaatccggaggccactaccgaagatttgatgcgttttatccccggcccggatctg
ccaggcggaggcattatcgtggggctggacggtatccgccaagcctatgagaccgggagg
ggaatcttccgcacccgcgctaagacctcgattgagcgagttagcgcccggaagatgggg
attgtggtcaccgaactgccctatatggtgggctcggaaaaagtgattgaaaaaatcaag
gacggggtacaaaaaggccggttaaagggaatttccgcagtcactaacttaactgaccgc
gaacatgatctacgcctagttatcgaagtaaaatccgggtttaacccggaggcagtgcgc
gcttccctgttcaaacacactcccatggaagattctttcgggattaacgcggtagcgctg
gtcgatgggcagccgcgcaccttgggtctaaaagaaatgctgcaggtgttcttagatcac
cggatggagatcgtgatgcgccgcagccagtatcgcctgcgtaaacggcaagaacggctg
catttggtacgcggcctgctaatcgcagtcctcgatatcgatgatgttattcagattatt
cgcgcctccgaggactccgcccaggcaaaatcccgcttaatggaggcttttgacttagat
gaggtacaagctgaacatatcctgtccctgcaactgcgcaggttaacaaagttttctcgt
ctagagttagaggcagagcgtgatcgcttaaccgcagaaattgcggagctggaagctctg
attgcctcgcgagaaaaacgccaagagctggtggccagcgagctgcgggaagtagcccaa
aagcgctctgatcctcggcggacagtgctgctggaagaagagggcgcggcggagttaaca
gccgaccaagatactcccttggagatcccggatgagccggcaaccgtggtcttaggggca
ggcggcctagtggcgcgcttccccgggcatgaagctttatctactgaccaggggcgcgaa
ccttgggataccattatttccactgccctgaccactgcccgcggccaggtgggagcggtg
acttctcatggcactttgtataagctgactgccctggaagtgcccgctttggtacgttcg
gcagcggcgccttccctgcgcggtacgcctccgatttcgcggctgctgaatttagaggac
ggcgaggaagtagtggggctggtgcctctggatgaagacggaccgacttggtgggccgcc
acggctggcggggtgattaaacggatccgtccccaggtgttggctacccaggattcttat
tccataatcacgctggactccggcgatcaggtagtggccgcgggcagtggcagcgatgat
ggcgcctttgtactgatttcttcggcagcgcaactgctgcgtaccccggcagataaagta
cgtcctcaaggacgcaccggccaaggtatttccgggatgaaactttccgagggcgaccaa
gtaatcgccgccgctttgaccagtaccgatgccttagagtcttccctggtggtaacagtc
gcggggattgctacttccgaggcaggcagcggacaaaccagcgccaaagtcacccccctg
ctgcagtatccccagaagggacgcgccggacagggggtgcggtgtcaacgtttcctaaag
ggtgaaagccgcttggcattggcggcgattactgccactcccccgcgcgccctcagcaaa
gatggctcccctctttctttaccggcgcaaactgataagcgagatgcttccgggagcgga
ttaaagcggcaaatctacttcttggggtaa
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