Varibaculum cambriense: CYK25_005655
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Entry
CYK25_005655 CDS
T09090
Name
(GenBank) ATP-dependent DNA helicase UvrD2
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vcb
Varibaculum cambriense
Pathway
vcb03420
Nucleotide excision repair
vcb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYK25_005655
03430 Mismatch repair
CYK25_005655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcb03400
]
CYK25_005655
Enzymes [BR:
vcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYK25_005655
DNA repair and recombination proteins [BR:
vcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CYK25_005655
MMR (mismatch excision repair)
Other MMR factors
CYK25_005655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_12
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WIK87728
LinkDB
All DBs
Position
complement(1214691..1216736)
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AA seq
681 aa
AA seq
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MEKAEELLKHLDPDQAKAARTLRGPVCIRAGAGTGKTRAITYRIAYGVRTGVYHPYSVLA
VTFTVRAAAEMAARLRLLGVEGVQARTFHSAALRQLRYFWPTAVGGQLPKLIENKSSLVG
AVASRLGLPKERAAVRDYCAAIEMAAVSMVAPEDYGNWVKSSGVQPPAGISTYDMADILR
GYSEAKKERSVIDFEDVLALTCGMIEERPDIAQQIRSQYRFFVVDEYQDISPLQKHLLEL
WLGESNRDLCVVGDAAQTIYSFAGATPEYLVNFAQEYPGAHTVTLARDYRSTPQIVSLAN
GLVNRDKQTKKQAVKLSSMRESGSAVHFDRYPDDEAEASAIAKMIQERIAAGTPASDIAI
LFRTNAQSSLFEAALAHREVKYWVRGTEGFFKRPEVSALLKQASLIARRGAQGNPGEIVA
ELARPLGWSPQAPATQGALLDRWEALNTLVAQAQLKEAAGLSLASLVQEWQELAEAQLDP
SGGGVTLASIHSAKGLEWKTVFLAGVSEGLLPITQAKSGKELAEERRLAYVAVTRARDEL
FVSYAQKRSLDRKATRACSRFFSPVWPREESAVKTVRTPSARQDTKRFLKEASPEEQEYF
ECLRQWRLLVAQGQGKPAYTVFSDTTLRDIATANPQTLKQLSLLRGIGPVKLEQFGAAVL
RILRGADPEQVAHEHLQGLSD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaagcagaagaacttttaaaacatttagaccctgatcaggcgaaagccgcccgg
actttacggggccccgtatgtattcgggcaggtgcgggtaccggaaaaacccgggcgatt
acctatcgcatcgcctatggggtgcgcaccggggtttaccatccctactcggttttagcg
gtgacttttacagtccgggcagccgcagaaatggcggcgcgtttgcggctcctcggggtt
gagggcgtgcaagcccgtacttttcactcggctgctctgcgacagctcagatatttttgg
cctactgccgtcggtggacagctccccaaactaattgaaaacaagtcttctctggtaggg
gcggtagcttcccggctcgggctccccaaagagcgggcggcggtgcgtgattattgtgcc
gcgattgaaatggccgcggtgagtatggttgctcccgaggactatggaaactgggtaaaa
agcagcggggtgcaacccccggccgggatttccacttacgatatggctgatattttgcgc
ggatatagcgaggctaaaaaggaacgatccgttatagatttcgaggatgtactcgctttg
acctgcggaatgatcgaggagcgtcctgatattgcccagcagatccgctcccaatatcgt
ttcttcgtagtcgatgaatatcaggatatttctccactgcaaaaacatctcttagaactg
tggctgggggagtcaaaccgtgatctgtgcgtagtgggggacgcggcgcaaaccatttat
tcttttgccggggccactccggagtacttggtgaactttgcgcaggaatatcccggtgcc
catacggttactcttgctcgcgattatcgctccaccccccagattgtttccctggcgaat
ggcttagtcaaccgggataagcaaaccaaaaaacaggcggttaagctctcttcgatgcgc
gagtctggtagtgcggtgcacttcgatcgctaccccgatgatgaggccgaggccagcgcc
atcgcaaaaatgattcaggaacggatcgcagcgggcacgcctgctagtgatattgcgatt
ctgtttcgtaccaatgcccaatccagcctgtttgaagcggctttggcgcatcgggaggtg
aaatattgggtgcgcgggacagaaggattctttaaacgccccgaagtttccgccctccta
aaacaggccagtctgatcgctcgtcgcggggcgcaaggcaaccctggggaaatcgtagcg
gaattagctcgtcctctgggatggtcgccgcaagctcccgccactcagggcgcgctgctt
gaccgttgggaggcgttaaataccctggtagcgcaggcacagctcaaagaggcggcggga
ttgtcgctggcctctttggtgcaagaatggcaagaacttgccgaggcgcagctcgatccg
tctggcggaggagtcactttggcgtctatccattccgccaagggtctagagtggaaaact
gttttcctggcgggagttagcgagggactgttgccgattacccaagctaaatcgggaaaa
gagctggcagaagaacgtcgcttggcttatgtggcggtaactagggcgcgcgatgaacta
ttcgttagctatgcgcagaagcgttcgctagatcgtaaggccacccgcgcctgttcccgg
tttttttctcccgtgtggccgcgggaagaatccgcggtaaaaaccgtgcggactcccagc
gcgcgtcaagatactaaacgattcttaaaagaggccagcccggaagaacaagagtatttt
gagtgtttgcggcagtggcgactcttggtggctcaaggacaggggaaaccggcttatacc
gtgttttccgataccaccttgcgcgatattgccactgccaatccgcaaaccctaaagcag
ctgtcgctacttagaggaatcggcccggtcaagttagaacagttcggggcggcggtttta
agaattttgcgaggagcggatcccgagcaggttgctcacgaacacctgcaaggtttgtct
gactag
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