Varibaculum cambriense: CYK25_005905
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Entry
CYK25_005905 CDS
T09090
Name
(GenBank) HRDC domain-containing protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vcb
Varibaculum cambriense
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcb03016
]
CYK25_005905
Enzymes [BR:
vcb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CYK25_005905
Transfer RNA biogenesis [BR:
vcb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CYK25_005905
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
WIK87774
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Position
1267272..1268471
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AA seq
399 aa
AA seq
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MSETLYRPRLGSVPLTDDRLQYRKHLREYSNPGQYVAFDTERASGIRYLDKAYLIQAKGQ
SAPLVLLDPLVLDDLSDFSEACKNSTWVLHAAKEDLECMEWAGLQAPRLFDTQIAAKLLG
YEHVGLGAVTEEVLGVKLAKNHTRENWSLRPLKQSWLDYAALDVEYLVELALALKERLEA
AGRLAWAEQEFSYTLAHYRRQTHPEPWRQVKGAGKARSPRQLGLLRELYSQRDEIARERD
VAPHRVLPNRDLVDLVLQTPRSYQELSRRPFMKRRQLRRYARRWWQAIKKVRDLGKDQLP
GREPPRKLHEISSLATWDKIDPARAELYRLLKEHVSTWAQEKQIWAELALSPSAIRRVAA
YWEPGKDLQNLLKTAEARDWQLAHFQPRFEQLCSAWTKR
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaccctttaccgtccccgtcttggatcggttcccctgaccgatgaccggctg
caataccggaaacacctgcgcgaatatagtaatcccggccagtacgtggcttttgatact
gagcgcgccagcggaatccgttacctagacaaggcctatttaatccaggcaaaaggtcag
tccgctcccctggttctacttgatcccctggtacttgatgacctatcggatttcagtgag
gcctgtaaaaacagtacctgggtgttgcacgctgccaaagaagatttagagtgtatggag
tgggcagggctgcaggctccccggttatttgatacccaaatagcggcgaaattattggga
tatgaacacgtgggactgggggcagttaccgaggaagtattaggggtaaaactagctaag
aaccatactcgggaaaactggtcattacgtcctctcaagcaatcatggctggactatgct
gccctggatgtggaatacctggtcgagctggcactagccttaaaagagcgcttggaggca
gcgggtcgtctggcttgggcagaacaagaattttcctatactttggctcactatcgtcgt
cagactcaccccgaaccttggcggcaggtgaaaggcgctggcaaagcccgctctccgcgc
caactggggttgttgcgggagctttatagccaacgcgatgaaatcgcccgtgagcgggac
gtggcgccccatcgggtgctacctaaccgcgacctggtggacttagttttacagactcct
cgttcctaccaagagttatcacgacgtccctttatgaagcggcggcaactacgccgatat
gcccggcgctggtggcaggcaataaaaaaggtacgcgatctgggaaaagaccaattaccg
gggagagaacccccgcggaaacttcatgaaatatcttcgctagcaacttgggacaaaatc
gatccggcgcgtgctgagctttaccgcctactgaaagagcacgtatccacctgggcacag
gaaaaacagatatgggcagagttggcactttcccctagcgctatccgccgggtagcggcc
tattgggaacccggcaaggatctgcaaaacttgctgaaaactgcagaggcgcgggactgg
cagctagcacattttcaacctcgtttcgagcagctatgctctgcttggacaaaacgatag
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