Varibaculum cambriense: CYK25_005955
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Entry
CYK25_005955 CDS
T09090
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
vcb
Varibaculum cambriense
Pathway
vcb00470
D-Amino acid metabolism
vcb00550
Peptidoglycan biosynthesis
vcb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
CYK25_005955 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
CYK25_005955 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vcb01011
]
CYK25_005955 (murD)
Enzymes [BR:
vcb01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
CYK25_005955 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
vcb01011
]
Precursor biosynthesis
Amino acid ligase
CYK25_005955 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
TrkA_N
2-Hacid_dh_C
UDPG_MGDP_dh_N
Rng_hyd_C
Methyltransf_25
Methyltransf_11
AdoHcyase_NAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WIK87780
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Position
complement(1283140..1284579)
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AA seq
479 aa
AA seq
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MTNQNWAGRVICIIGLGSSGRACCEVLSTLGAKVYGIDGQEEAVANCSQDYPHAQFYQGQ
GDNWEDLLDKIDPSLLVVSPGVPPRHSAFTWAKKHQVELWGEVELAWQIQKTATSRPNTP
WLTVTGTNGKTTTVGMTQSILQAAGYEALAVGNVGSPVVLAAAQAKAQVLAVELSSFQLY
TISSLSPLAAVCLNIDADHLDWHGSEAAYVAAKARVYERAQKAVLYNQQDSRTLDLTLAA
DVTEGCRAIGFTTGIPDIYQLGLVENMLIDRAYSANPYKEAVALVGMGDFHYYHGEPGIT
VLQDALAAAGLTRALGVAPEAVRDGIRSFVPQAHRRAIVGQAAQVTWIDDSKATNTHAAA
ASLSGMPPASVVWIAGGDTKGQSFDQLVTQIAATLRGVVLIGEDRSALREALAQHAPKVP
VVEVSSHDDMMFSVVNEAVALSRPGDKVILAPACASWDQFANYSQRGEAFANAVSRLEG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaaccaaaactgggcaggccgggtcatctgtattatcggcctgggatcatcgggc
agagcctgttgtgaagtgctctccactctgggggccaaggtatatgggattgatggccaa
gaagaagcagtggccaattgctcccaggactacccgcacgctcagttctatcagggacaa
ggagataactgggaagatctgctagataagattgatccttcattgctagtggtcagtccc
ggggtacctccacgccatagcgctttcacttgggcgaaaaaacaccaggtggaactgtgg
ggcgaggtcgaattagcttggcagatccaaaaaaccgctacttcccgcccaaacaccccc
tggctaaccgttaccggtaccaacggcaaaaccaccacggtcgggatgacccagtctatt
ttgcaggctgcgggttatgaggcactagcggtcggaaacgtaggctccccggtggtatta
gccgctgctcaggctaaagcccaagtattagcggtagaactatccagcttccagctctat
accattagctccttatcgccactggccgcagtctgtttaaatattgatgcggatcatttg
gattggcatgggagtgaagcagcctatgtcgcggcgaaagcgcgggtttatgaacgtgcc
caaaaagccgtcctctacaatcaacaagattcccgcaccttagacctaaccttagctgcc
gacgtaaccgaaggatgtcgggcgatcgggttcactactggtatccccgatatctaccag
ttgggtctagtagaaaatatgctgattgatcgcgcctatagcgctaatccctataaagag
gcagtagcacttgtgggaatgggggattttcactattaccacggtgagccggggattacg
gtgctccaagatgctttagcggcagctgggctcaccagagccctaggggtagcccccgag
gcagtgcgtgacggaatccgcagcttcgtcccgcaggcgcatcgaagggccatcgtaggt
caggctgcgcaggtcacttggattgatgattccaaagccaccaacacccatgctgcggct
gcttctttatccggaatgcccccggcctcagtggtgtggatagctggtggggatactaaa
ggacagtcctttgatcagctagttacccagatagctgccactttacggggggtagtactg
atcggggaagatcgctccgctttgcgtgaggcattggctcagcacgcccctaaggttcca
gtagtggaagttagctcccatgatgacatgatgttctcggtggtaaacgaggcagtcgcg
ctctcgcgtcccggagataaagtgattttagcgcctgcctgtgcctcctgggatcagttt
gcaaactattctcagcgtggggaggctttcgctaatgccgtgtcccgtttggagggatag
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