Varibaculum cambriense: CYK25_006620
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Entry
CYK25_006620 CDS
T09090
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
vcb
Varibaculum cambriense
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcb03016
]
CYK25_006620 (truB)
Enzymes [BR:
vcb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
CYK25_006620 (truB)
Transfer RNA biogenesis [BR:
vcb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CYK25_006620 (truB)
Prokaryotic type
CYK25_006620 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DKCLD
BTAD
Motif
Other DBs
NCBI-ProteinID:
WIK87894
LinkDB
All DBs
Position
complement(1426546..1427592)
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AA seq
348 aa
AA seq
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MLDALKEAPDFAPAGAALQIPRAENTAPGGVIAIDKPLGVTSHDVVARLRRLAGTRKVGH
AGTLDPAASGVLVAGIGRGTKLLQYLQGQKKTYVTRVCFGVETDSEDAEGTITATRGATL
ADLDNLETALASWRGQVMQVPSAFSALKIRGKRAADRVRAGEAVSMESRPISIYELVSLG
EPKAGELAGTKVVYQDLRVTCSAGTYIRALGRDIGNQLGVGAHLVALRRLKVGSFSASGL
ARPNAPFNAYSLAELSQLVTAGQALPIVSLDQICKELFPSCQVTPEVITALGYGQRPQIS
AEMRGALDKKDANTAEKIYGLYLPGQKISLLASPVEGKWRSVLSLQSR
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgcgctcaaagaggctccagattttgctcccgccggcgcggcgctgcaaatt
ccgcgtgcggaaaacactgcccctggcggggtaattgcgattgataaacccttaggggtt
accagtcatgatgtagtggcgcgcctgcgtcgcctggcgggaacccgcaaagtaggacat
gcgggtaccctagatccggcggcctcgggagtgctagttgccgggatcgggcggggaacg
aaactgctgcaatacctgcaaggacaaaagaaaacgtatgtcacccgggtgtgcttcgga
gtggaaaccgatagcgaggacgccgaaggtaccattactgctacccgcggggcgacttta
gcggatctggataatctagaaaccgcgctggcctcctggcgcgggcaagtaatgcaagtg
ccgagcgctttttccgccctgaagattcggggtaaacgagctgctgaccgggtgcgcgcc
ggtgaagcagtgagtatggaatctcgcccgattagtatctatgaactagttagcctggga
gagccgaaagcgggagagcttgcgggcaccaaggtggtttaccaagacctgagagttacc
tgttcggccggtacctatattcgcgccctgggaagagacataggaaaccagctgggagtg
ggggcacacctggtggcactgcgtcgccttaaggtcggttcctttagcgctagcggcctt
gcccgtcccaatgcgccttttaacgcctatagcttggctgagttatcgcagctggtaacg
gcgggacaagcgctgccgattgtgagcctggatcagatctgtaaggaactgttccccagc
tgtcaggtgactccggaagttatcaccgctttaggttacggccagcgtccgcaaatctcc
gctgagatgcggggcgcactggataaaaaagatgcaaatacggctgaaaaaatctatggc
ttgtatttgccggggcaaaagatatcgctattggcgtcgccagtggagggcaagtggcgt
tctgtactaagtttacaaagtaggtaa
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