Varibaculum cambriense: CYK25_006800
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Entry
CYK25_006800 CDS
T09090
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vcb
Varibaculum cambriense
Pathway
vcb03420
Nucleotide excision repair
vcb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYK25_006800
03430 Mismatch repair
CYK25_006800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcb03400
]
CYK25_006800
Enzymes [BR:
vcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYK25_006800
DNA repair and recombination proteins [BR:
vcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CYK25_006800
MMR (mismatch excision repair)
Other MMR factors
CYK25_006800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WIK87926
LinkDB
All DBs
Position
complement(1466513..1470001)
Genome browser
AA seq
1162 aa
AA seq
DB search
MSNTQQVRYSPAQIAKAIGQYRPNEDQEKVITAPVDQPMMAIAGAGAGKTATMAFRVVYL
VANGLVAPDRVLGLTFSNKADAELGSRLTDNLQVLAANPDFSEVAEVLTDPETGGTILPV
TSTYNAFANQIVRQYGSRLGISPACILLDEARRWQIMYEIVSTWPGDLTTDSSIATTVGR
ALAIGSQVRDQLLDIAQVRAGLAQMRELYSLGRPKGRSQKPNANMQKFLDSLTHRGELLD
IFASYEEYKKENGYLEYADQIYYAAMLVARFPDIRDTLRQRYDVILLDEFQDTSVAQLKL
FSTIFAGKGAMAVGDPNQAIYDWRGASELSMQNFLTEFGIPPEEMASHIQDMPVTYRNRE
AILKAANQVVAPLSKLATGENTQQVEQQIRSLIQVPNPEYGFDPAPSPEAFAAPASSVKA
KELVTCPQKRDDPGKVHLYFAQDCEEEAELVADFFAERWGERDKIALKNKQLPPQKQESL
PTGAILLRKHSQGPLITQALRRRGLPVEITGVAGLIYDPAVADVIAALQISADAGQGDYL
MRLIIGCGISPADIDLLWRWARHLANPDDIPDINPQAFLMDALDNLPEPGWTSPGAGSGF
STEAHRRLNILRTQLATVRSHIHDPLGLLVQRTIFALRLDLDVKIRPDGGVSQRCLESFV
KIAREYEATGVSANLHSFLDWLRLADEQGSGIDMPLQEPNPNAIQLMTIHAAKGLEWTWV
AIPGLDESCTHQGNLPKAPFKAGNGRCSESSWITDVAMIPYDLRPDKEVLPTIERGLEQS
GYDFEGEAYSDNPKVLESYKCALGFTSQLADRRLAYVAFTRAESELLVGGSAHTATAVTE
RVPSQFLVEIDSTGKMRELRNREPAGDEDDWTPVPSEMLWPTSPSVQLSRLSSAANELRA
LIDNVHRDHFLHSLLSAENAKEALDLASNHSPWMQQAVQLIRDEQAEKEFRTQVELPISS
GVTKARRLQEDPAGFALSQRRPLPDFPTGGATLGTLFHEWVDQELRGYVYSLPQDLDAGL
RKSLQRLQQKWKSGTVHPDRGWEYLDSEIEFAAPLATKLVARIDAIMRNPATGKPAIIDW
KTDSLIFDSSGEIASESEEKVANYMRQINTYRLVYADSLGLRLEDVEAALYFVRHDLLCN
LNEWTERLNLPQKLEELLPDLR
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatacccaacaagttaggtactcgccagcgcagatagctaaagccattgggcag
tatcgtccgaacgaagatcaagaaaaagttattactgccccggttgatcaaccgatgatg
gcgattgccggagcaggtgcgggaaaaactgccaccatggcgtttcgagtggtttatctg
gtagccaacggtttggtagctcccgatcgggtgctgggactaactttttcaaataaggcg
gatgctgaactgggaagccgcctgactgacaatctgcaggttttggcagccaaccccgat
ttttctgaggtggcggaggtcttaactgatccggagaccggcggtacgatcctgcccgta
acttctacctataatgctttcgcgaatcagatagtgcgccaatatggatctcgactgggg
atttctccggcctgcatactactagatgaggcgcgccgctggcagatcatgtatgagatc
gtcagcacttggccaggagatttgactaccgatagcagtatcgcgaccacagtcggtagg
gctttagctatcggttctcaggtacgcgaccagctattagacattgcgcaggtgcgggcg
ggactagcccagatgcgggaactttatagcttaggtaggccgaaaggaagatcccagaaa
cccaatgctaatatgcaaaaattcctggattctctaacccataggggggaattgctggat
attttcgcaagctacgaggaatacaagaaagaaaatggttacctagaatacgctgatcaa
atctactatgcggctatgttagttgcgcgtttccccgatattcgagatacgctgcggcaa
cgctatgacgtgatactacttgatgagtttcaagacacttcagtggcgcagctgaaactg
ttttctacgatttttgctggtaaaggagctatggcggtcggtgaccctaatcaggccatc
tacgactggcgaggcgcctccgagctttcgatgcaaaatttcttaaccgaatttggtatt
ccgcccgaagaaatggccagccatatccaagatatgccggttacttatcgcaatcgcgaa
gcgatactaaaggcagctaatcaggtagtggcgccgttaagtaaactcgcgacaggagaa
aatacccagcaagttgagcagcaaattcgctccttgatccaggtgcctaatccggaatat
ggattcgatcctgccccctccccggaggcttttgcagctcccgcgtcctcggtaaaagca
aaagagctggttacttgtccgcaaaagcgggatgaccccggtaaagtccatctctatttc
gcgcaagactgcgaagaagaagcggaattagtggcagatttttttgccgagcgctggggt
gaaagagacaaaatagctctaaaaaataagcagctcccaccgcaaaagcaggaaagtcta
cctaccggagcaatattactgcgtaagcattcccaaggacccttaatcactcaggctctg
cgtagacggggacttccagtagaaattaccggggtcgcaggcctcatctatgatccggca
gttgccgatgtgatcgcggcactgcaaatatccgcagatgccggacaaggcgattacctc
atgcgactaatcattgggtgcggtattagcccggcggacattgatttgctgtggcgctgg
gcgcggcatttggccaacccagatgatatccccgatatcaatcctcaagcattcttgatg
gatgcgttagataacctaccggaaccgggctggacatccccgggagctggcagcggcttt
agcaccgaagcacatcgccgcctgaatattctccgtacgcaactagctaccgtgcgtagc
catatccatgacccgctgggtttattagtgcaacgcacaatttttgccctacgactggat
ctagatgtaaaaattcgcccagatgggggagtgtcgcagcgttgcctggaaagttttgtg
aaaattgctcgcgaatatgaagctaccggagttagcgctaatctgcacagcttcttagat
tggctcaggctcgctgatgaacaaggctctggcatcgacatgccactacaggagcctaac
ccgaatgctattcaactgatgactatccatgcagctaaaggcttggagtggacttgggtc
gcgattccgggactcgatgaaagttgcactcaccagggaaatcttccaaaagctcccttt
aaagcgggaaatggcagatgtagtgaatcctcctggattaccgatgttgcgatgattccc
tatgacttgcgtccagataaggaagtactgccaactattgagcgtggcttggaacaaagc
ggttatgactttgaaggggaggcttattcggataatcccaaagtgctagaaagctataaa
tgtgccttgggctttacctcgcagttagctgaccgacgtctagcctatgtggcttttacc
cgcgcggagtcggaactgctagttggcggaagcgcgcacaccgctaccgccgtcaccgaa
cgagtaccctcccaattcttggtggaaatagattccacggggaaaatgcgcgaactccgt
aaccgggagccggcaggagatgaagatgattggacgcccgtaccgagcgaaatgctctgg
ccgacctctccgtctgtgcagttatcgcggctttcaagcgctgcaaatgagctgagggcg
ctaatagataatgtgcaccgagatcactttttgcatagtttgctatctgcagaaaatgcg
aaggaagcgttagatttggctagtaaccattccccgtggatgcaacaggcagtacagcta
attcgcgatgaacaagcggaaaaggagtttcgtacccaagtggaacttccaatttccagt
ggcgttaccaaggcacgtcgattacaggaggatccggcggggtttgctttgagccaacgg
cgccctctgccagattttcccactgggggtgctactttaggaactttgttccatgaatgg
gtagatcaggaattgcgcggatatgtttattccctgccccaggatttagacgcagggctg
cgcaaatctctgcagagattacagcagaaatggaaatctggaaccgtgcaccctgatcgg
ggttgggaatatctggattccgagattgaattcgcggcgccgttggcgactaaactggtc
gcccggattgatgcgatcatgcgtaatcccgctaccggtaaacccgcgattattgactgg
aaaaccgattccttaatctttgatagctccggtgagattgcgtccgaaagcgaagagaag
gtggcaaactatatgcggcaaatcaatacctatcgcttggtttacgctgattcgctaggg
ctgcgcttggaagatgtggaggcggcactttattttgtacgccacgacttgctatgcaac
ctgaacgaatggactgagcgcctgaaccttccccaaaaactcgaagagctattaccggat
ttgcgctaa
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