Varibaculum cambriense: CYK25_008240
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Entry
CYK25_008240 CDS
T09090
Name
(GenBank) D-alanine--D-alanine ligase family protein
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
vcb
Varibaculum cambriense
Pathway
vcb00470
D-Amino acid metabolism
vcb00550
Peptidoglycan biosynthesis
vcb01100
Metabolic pathways
vcb01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
CYK25_008240
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
CYK25_008240
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
CYK25_008240
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vcb01011
]
CYK25_008240
Enzymes [BR:
vcb01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
CYK25_008240
Peptidoglycan biosynthesis and degradation proteins [BR:
vcb01011
]
Precursor biosynthesis
Amino acid ligase
CYK25_008240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp
CPSase_L_D2
ATP-grasp_4
ATPgrasp_ST
Motif
Other DBs
NCBI-ProteinID:
WIK88177
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All DBs
Position
complement(1767132..1768259)
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AA seq
375 aa
AA seq
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MTQNNQSKPRVLVLFGGESGEHGISCATAAGVVAAIDHDRFEVVTVGITPQGQWVPIDFS
SDQFQISDTGVAEVPAANRQLFLSPGDGHVVSLPTQLGSEFSLSDLGNFDVVFPLLHEPF
GEDGTVQGLLEMMHLPYVGCGVLASAAAMDKPTTKVLLHEAELPAGKWETVTAGQWKRDR
AGVIERLERLGLPVFVKPARAGSSLGITKVSVAADLEAAITKAQAVDPRVIVEQELTGIE
VECAVLQGADGRPRTTEPGRIAMGDDVPFYDYKTKYFGEDTVSLEIPAKIPGHLATQVRE
IAAQAFEALGCEGLARVDFFVDPEKDAVVINEVNTMPGFTPFSMYPKLWEHMGIGYSQLM
EELITLALSRPVGLR
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcaaaataatcaaagtaaacctcgggtattagtgctgttcgggggagaatcgggg
gagcatgggatttcctgtgcgaccgctgccggggtagtagcagccatcgatcatgaccgt
ttcgaggtcgtcaccgtagggattaccccgcagggtcagtgggtgccgatagattttagt
tccgaccagttccagatatccgataccggtgtcgcggaagttcctgctgccaatcggcag
ttgttcttatccccgggagatggacacgtggtgagcctacccacccagctggggtcagaa
ttttccttgagcgatctcggcaactttgacgtagtattcccgctgctgcatgagcctttc
ggtgaggatggaaccgtacagggactgttagaaatgatgcatctgccgtatgtgggatgc
ggagtgctagcatcggcggccgcgatggataaacccaccactaaggtgcttttgcatgag
gccgagctgccggccggaaaatgggaaaccgtaaccgccgggcagtggaagcgtgaccgt
gctggggtaattgagcgtctagaacgcctggggttgccggtttttgtgaaaccggcacgg
gctggctcctccctggggatcaccaaggttagcgtcgctgctgacctagaagcagcgatc
accaaggcgcaagcggtagatccgcgggtgattgtagaacaagaacttaccggtatcgag
gtggaatgtgcggtgctgcagggagcagacgggcgtcctcgtaccaccgagccgggacgc
atcgccatgggtgatgacgtgccattttatgactataaaaccaaatattttggggaagat
accgtcagcttagagatcccggcaaagatccccgggcatttggctactcaggtgcgcgag
attgctgcccaagcttttgaagcccttgggtgtgagggcctggcacgagtggacttcttt
gttgatccggaaaaagatgcggtagtcatcaacgaagttaacaccatgcccggattcacc
ccgttttctatgtatcctaagctgtgggaacatatgggcattgggtattcgcagttgatg
gaggaactgattactttggcgttatcgcgtccagtgggattgagataa
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