Varibaculum cambriense: CYK25_008810
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Entry
CYK25_008810 CDS
T09090
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vcb
Varibaculum cambriense
Pathway
vcb03030
DNA replication
vcb03430
Mismatch repair
vcb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CYK25_008810 (dnaE)
03430 Mismatch repair
CYK25_008810 (dnaE)
03440 Homologous recombination
CYK25_008810 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcb03032
]
CYK25_008810 (dnaE)
03400 DNA repair and recombination proteins [BR:
vcb03400
]
CYK25_008810 (dnaE)
Enzymes [BR:
vcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CYK25_008810 (dnaE)
DNA replication proteins [BR:
vcb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CYK25_008810 (dnaE)
DNA repair and recombination proteins [BR:
vcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CYK25_008810 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
Band_3_cyto
Motif
Other DBs
NCBI-ProteinID:
WIK88272
LinkDB
All DBs
Position
1876345..1879749
Genome browser
AA seq
1134 aa
AA seq
DB search
MSFVHLHTHFETSYMDGTIRLDRGAKIAAELGQDALAITDHGTLAGTYKHFLACNKAGIK
PILGVETYLAIGSRFDHRYRVEDGKQKRYEHLTLLAKNRKGWENLVTLQAAAHDSYWYKP
RIDFDLLKSHSEGLICMTGCLAGPYLGELAKVPGAKALAEDFKAELAKVREKHDLPKATL
EELIARLAAIETDDAKSAASKAMALLDAKNGKDKAIANLKRLRDIFGEENLVVELMEHGI
EKESTIVPLAASIASEYGLSCVATGDAHYEKEGDADMHDAWLALSTGAGARLDNKDRLVF
DGEGYFLCSEDQMRAKRSEDFWADAVSNTAEVANMVDEDVLPERKLYLPAFPTPKGKTEK
EYLVEKVKAGAKRRYGAKLPDEVRSRLNKELKVIDQMGMCSYFLIVEDLISWAKSEVSAK
DWIAGKKKKSKAPILVGPGRGSVGGCLLAYCLGIHDTDPLRSDLMFERFLDPSRVGMPDV
DTDFEKNRRDEILDFLVLRWGAGHVLQLGTLSTRGVKDAIDSGARLLGITVKDAATLKEQ
VVDNMTIEELLDKQVAEGKGFRNALNALSRRADTDKWMELSKFFYGLVRGEGIHACGVVI
SDQDLTKMVPTRLNRGSTARDGAPPVSEWEGKDIENLGLLKQDVLGLRTLDIIGTCLAQA
SRLEGKKITTSDIPDPDSKAASPAWELLAKGDNAGVFQVESASARDLTRAVSPTCLEHIC
AINALNRPGPMMAGQHELYAKLVTSGDKADISDLAGTKAQVGVVESILGSTQNLAIYQEQ
SMLIGKVIGGFDNGGVNLLRHAISKKNKEEFAELTPRFIEGAQQSISEDGKEKVSFSRSQ
AAAIWHLVEGGANYSFNKSHSAAYGMLTYRCAYLKAVYPAPFTAAALIHTDLPDKRRALL
EDLQGVSVGAPDINDSDLLPSAKSKTEVLLGLGDIKGLKKGAKKLLKARSGVPFESMEDF
ITRAKPTKTQLDALTESGALDRFGARDNTDPVEKWVAELGRLGIVLSAENPLDVYSGQVR
KFVADNPPNQAVPAISRLGGLSLGAHRSIGICEAVETKRIKSGLMATFTVSNRQGDREKI
IAWPKAFENPITRLGEVKPGTIAVFNLLVKDGFLGSGTDYFTDRVTIFHPEEEQ
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcgtacacctacatacgcactttgaaacgtcctatatggacggaactatccgg
cttgatcgcggggcaaagattgccgctgagcttggccaagatgcccttgcgatcaccgat
catggcacgcttgccggtacctataagcactttctagcctgcaacaaggctggtattaaa
ccgattttaggggtagaaacttatcttgctatcggctcgcgctttgaccatagataccgc
gtagaagacggtaaacaaaaacgctacgaacaccttactctgcttgctaagaatcggaag
ggctgggaaaacctggtcaccttacaggcggcggcgcatgattcttactggtataagccg
aggattgattttgatttgcttaagtcccatagcgagggacttatttgcatgactggttgt
cttgctggcccttatctgggggaactggcaaaagtgccgggcgcaaaggcgctggctgag
gacttcaaggcagaacttgccaaggtgcgggagaagcatgacctacctaaagctactttg
gaagaacttatcgctaggctcgccgccattgaaactgacgatgccaaaagcgctgccagt
aaagctatggccttgctagatgccaaaaatggtaaagataaggcaatagctaacctgaag
cgccttagagatattttcggcgaggaaaacctagtcgtagaacttatggaacacgggatt
gaaaaagaatccaccatcgttcccttagctgcatccattgccagcgagtacggacttagc
tgcgtggctaccggggacgcacactatgaaaaagagggcgatgccgatatgcacgatgct
tggctagcgctatccaccggtgcgggggcaaggctagataataaagaccggcttgtattt
gacggcgagggctattttctttgctccgaagaccagatgcgagccaaaagaagtgaggac
ttttgggccgacgctgtatccaataccgccgaagtagcaaacatggttgacgaagacgtg
ctgccggagcgaaaactatacttgccagcatttcctacccctaagggcaaaaccgaaaaa
gaatacctagtcgaaaaagtaaaagccggagcaaagcggcgctatggagcaaaactgcca
gatgaggtacgctcccggttaaacaaggaactcaaagtcattgaccagatggggatgtgt
tcttacttcctgattgttgaagacctgatttcttgggctaaatcggaagtttccgcaaaa
gactggattgcgggaaagaagaaaaaatctaaggctccgatcctggtcgggcctggtcgc
ggctcagttggagggtgcttgctggcgtactgcctaggcatacacgacactgacccgctg
cgctccgacctaatgttcgagcgtttccttgatcctagccgggtaggaatgccagacgtg
gataccgattttgaaaaaaaccggcgagatgagattttggacttcctggtgcttcgctgg
ggagcaggccacgtcctgcaacttggcacgctctctactcgcggggtaaaagacgcgata
gattccggggccaggctacttgggattacggtcaaagatgctgctaccttgaaagaacag
gtagtagataacatgaccattgaagaactgctcgataagcaggtagcggaaggcaagggc
tttaggaacgccttaaatgccctgtcgcgtagggccgataccgataaatggatggaacta
tcgaagttcttttacggactggtacgcggggaaggcattcacgcttgcggagtagtaatc
tcagaccaggacttaactaaaatggtgccaaccaggcttaatagggggtctactgctagg
gatggagcgccgccagtaagcgaatgggaaggcaaagatattgaaaacttggggctacta
aaacaagacgttttagggcttagaacgttagatattattggcacttgcctggcccaagca
tcccgtctagaaggcaaaaagataactaccagcgacattccagacccggactcaaaggca
gcctcccctgcctgggagctgctggccaagggagataatgcaggggtatttcaggtagag
tcggcttcagctagagacttaacccgagcggtatccccaacctgccttgaacatatttgt
gctattaacgctctcaataggcctggccctatgatggctggtcagcacgagctttacgcc
aagctggtcactagcggggataaggctgatatatcagacctagcggggactaaggcacaa
gtgggcgtggttgagtcgattctaggttctacccaaaaccttgctatctatcaagaacag
tccatgctgatcgggaaggtgattggcgggttcgataatggcggggtaaacctgcttcgc
cacgctattagtaagaagaataaggaagaatttgctgaacttaccccgcgtttcattgag
ggcgcgcagcaaagcattagcgaggacgggaaagaaaaagtatcgttttcgcgctctcaa
gctgccgcgatttggcacctcgtggaaggcggggcgaactattctttcaacaagtcacat
tcagcagcctacggaatgcttacctatcggtgtgcttatttgaaagcggtatatcccgcg
ccatttaccgctgctgcactgatccacactgacctgccagataagaggcgggcattgcta
gaagacttgcaaggcgttagcgtcggtgcgccagatattaacgattccgacctacttcct
agcgcgaaaagtaaaactgaggtcttgctagggctgggcgatattaaggggctaaagaag
ggcgcaaagaaacttcttaaggcccgtagcggggttccttttgagtctatggaagatttc
ataacgcgcgctaagcccactaaaacgcagttagacgcactcactgagtcgggagcgtta
gaccgtttcggggcaagagataacacggacccggtagaaaaatgggtagcagaactaggt
cgcctaggcattgttttaagtgccgaaaaccccctagacgtatattcgggtcaggtaagg
aagtttgtggcagataacccgcctaaccaagctgtaccggctatttctaggctagggggg
ctatctcttggcgcgcacaggtcaatcggtatttgcgaagcggtagaaacaaaacgtatc
aagtccgggctgatggcaacttttacagtgtccaaccggcaaggagacagggaaaagatc
attgcttggccaaaagccttcgagaaccctataacccgtctaggcgaggttaaacctgga
actatcgcggtgtttaacttgctggtgaaggatggatttttaggcagcggaacagactac
ttcaccgatagggtcactattttccacccggaggaagaacaatga
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