Vibrio cyclitrophicus: FAZ90_00285
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Entry
FAZ90_00285 CDS
T06393
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ90_00285 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcc03019
]
FAZ90_00285 (rhlB)
Enzymes [BR:
vcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FAZ90_00285 (rhlB)
Messenger RNA biogenesis [BR:
vcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FAZ90_00285 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QCI69621
LinkDB
All DBs
Position
1:complement(60078..61388)
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AA seq
436 aa
AA seq
DB search
MKKTHITEQKFADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVESTGIKAALAYG
GESYDKQLGKIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILE
QFTKGDVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFA
CEDYAINLPPIEEYIEHAIPMSDYDASALLEDLPAPLRLRTRNPQQRRSNNNGPRNGNRK
PNQNRRPRQPRHNKEA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgacttggatttactcccgcaagtc
attgaaggattggagaaaaaagggttcgattactgtacccctatccaagccttggcgctc
ccggtactgctcaccggccaagacattgcaggccaggcccaaacgggtactggtaaaacg
cttgcgtttcttactgctacttttaatcacctgctaaaaacacctgagcatgaagggcgc
aagcctaaccagccacgtgcgattattatggcaccaacgcgtgaactcgcgattcagatc
tacaacgatgctgactctctggttgaaagcacaggtatcaaagcagcacttgcttacggt
ggcgaaagctacgacaagcaactaggtaagatcgaagaaggcgcagatatcttaattggt
acaactggccgtatcatcgatttctacaagcagaaggtatttaaccttaaccatattcaa
gctgttgttcttgacgaagctgatcgcatgttcgatcttggtttcatcaaagacatccgc
ttcttgttccgccgtatgcctgagccaaaagatcgcctgaacatgctgttctctgcgacg
ctgtcttaccgcgtacaagagctagcgttcgaacacatgcacaacccagagcatgttgtt
gttgagccagagcgcaaaacaggtcaccgcattcaagaagagcttttctacccttctaac
gaacataagatggcccttctacaaacgttaatcgaagaagaatggccagatcgcgcaatc
atcttcgctaacacgaagcacaaatgtgaatcagtttggggtcacttggctgccgatggt
catcgtgttggtctactaacaggtgatgttccacagaagaaacgtgaaaagattcttgaa
cagttcactaaaggtgatgtagacctacttgtagcaaccgatgttgcagcacgtggctta
cacattcctcaagtaacacacgtattcaactttgacctgccagacgattgcgaagattac
gttcaccgtatcggccgtacaggtcgtgctggtgaaagcggtcattcgatcagctttgct
tgtgaagattacgcaatcaacttgccaccaatcgaagaatacatcgagcacgctattcca
atgtctgactacgatgcttctgcactactagaagatctaccggcaccattgcgtttacgt
acacgtaacccgcaacaacgtcgctcaaacaacaatggtccacgtaacggtaaccgtaaa
ccaaaccagaaccgtcgcccacgccaaccgcgtcataacaaggaagcttag
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