Vibrio cyclitrophicus: FAZ90_00830
Help
Entry
FAZ90_00830 CDS
T06393
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FAZ90_00830 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcc03021
]
FAZ90_00830 (rpoC)
03400 DNA repair and recombination proteins [BR:
vcc03400
]
FAZ90_00830 (rpoC)
Enzymes [BR:
vcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FAZ90_00830 (rpoC)
Transcription machinery [BR:
vcc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FAZ90_00830 (rpoC)
DNA repair and recombination proteins [BR:
vcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FAZ90_00830 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QCI69695
LinkDB
All DBs
Position
1:168362..172564
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDTIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLSTMDLHQEVEEMREELETTNSETKRKKVTKRLKLVEAFISSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGMATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLAGPAEAEKAYRTK
TAELHARVKVRITETVVDEDGNSTTETKMVDTTVGRAMLWQIVPAGLPYSIVNQKLGKKQ
ISNLLNECYRKLGLKDTVVFADQIMYAGFAYAALSGVSVGIDDMVVPQAKYDEIESAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMDNLSSETVINRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGIDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEDNSVDSMKVRSVVTCDADFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKTTGTVKL
HNAKFVVNKDKKLVITSRASEMTIIDEFGRTKEKHKLPYGSMLTKGDNAAVTAGEVVANW
EAHTMPIITEVAGRIQFVDMIDGITVSRQTDDLTGLSSSEVTDAAARPAAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNIEDGAEVGIGDTLSRIPQKSSGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITREGGDAYEEMIPKHRQLNVFEG
EKIERGDVIADGPETPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHSGDSQFLPGEQVEYHNVKIANRKLEAEGKELVRFERDLLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQKQREEEQEGPS
AEQATDNLAALLNAGFSSEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacacgattcgttcgtggtcttttggtgaagttaaaaag
ccagaaacaattaactatcgtacgttcaaacctgaacgtgatggtctgttctgtgcacgt
atttttggtccagttaaagactacgaatgtctttgtggcaaatacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgcatgggccacatcgaactagcttcaccagttgctcacatctggttcctaaaatcacta
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaactgaaccgggtatgactgatctagaaaaatctcagatgctt
actgaagaagagtatctagatcgtctagaagagtggggtgacgaattcactgctaagatg
ggtgctgaagcgatcaaagatctgctttcaacaatggaccttcatcaagaagtggaagaa
atgcgcgaagagttagaaacgactaactctgaaactaagcgtaagaaagttactaagcgt
ttgaagctagttgaagcgttcatctcatcaggtaacaagcctgagtggatgatcctaact
gtgcttccagtgctaccaccagatctacgtcctctagtacctctagatggcggtcgtttt
gcgacttcagatcttaacgacctttaccgtcgtgtgattaaccgtaacaaccgtttgaag
cgtcttctagagctagcggctccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcccttctagataacggtcgtcgcggtcgtgcgatcacgggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttcttggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacatcagtgtggtcttcctaagaagatggcacttgagctatttaagccgttc
atctacagcaagctagaaactcgtggtatggctacgacaattaaagctgctaagaagatg
gtagagcgcgaagaagctatcgtttgggatatcctagacgaagtaatccgcgaacaccca
gtactgcttaaccgtgcacctacacttcaccgtctaggtatccaagcgtttgaaccagta
ctaatcgaaggtaaagcgattcagcttcacccactagtgtgtgcggcatacaacgccgac
ttcgatggtgaccaaatggcggtacacgtgcctctaactctagaagcacagcttgaagct
cgtactctgatgatgtcgacgaataacattctgtcgccagcgtcaggtgatcctatcatc
gtaccttctcaggacgttgtattgggtctttactacatgacacgtgacaagatcaacgtg
aaaggtgaaggtatgtaccttgctggccctgctgaggctgaaaaggcataccgtactaag
actgctgagctacacgctcgtgttaaagtacgtatcactgagactgtagtagatgaagat
ggtaacagcactactgaaacgaagatggttgatacaactgtcggccgtgcaatgctatgg
caaatcgttccagctggcctaccgtacagcatcgttaaccagaagctaggtaagaagcaa
atttctaacctactaaacgagtgttaccgtaagcttggtcttaaagatacagtagtattc
gctgaccaaatcatgtacgcaggttttgcatacgctgcactttcaggtgtttctgttggt
atcgacgatatggttgtacctcaagcgaaatacgatgaaattgaatctgctgaagaagaa
gttcgtgaaatccaagagcaattccaatctggtcttgttactgcgggtgagcgttacaac
aaagttatcgatatctgggcatctacgaatgaccgcgttgcgaaagcaatgatggataac
ctatcttctgaaacagttatcaaccgtgatggcgaagaagaacagcaagaatcgtttaac
agcatctacatgatggccgactcgggcgcacgtggttctgcagctcagattcgtcagctt
gcaggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcaca
gcgaactttaaagaaggtctaaacgtccttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacagcactgaaaacagctaactcgggttacctaactcgtcgtcta
gtagacgtagcacaagacgttgtagtacacgaacatgactgtggcacgcatgaaggtatc
gacatgatgcctcacatcgaaggtggtgacgttaaagttgcactttctgagcttgctctt
ggtcgtgtagttgctgaagatgttcttaagcctggtactgaagatgtactgattccacgt
aatactctgattgatgagaagtggtgtcaaatcatggaagacaactctgtagatagcatg
aaagtgcgctcagttgttacctgtgatgcagacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggccacctagtaaaccaaggtgaagcagttggtgttatcgctgca
caatctatcggtgaaccgggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatctactgctgcggcagagaacagcatccaagctaagacaactggtactgtgaaactt
cacaatgctaagttcgtagtgaacaaagataagaaactggttatcacttctcgtgcatct
gagatgacgattattgatgaattcggccgtactaaagagaagcacaaacttccttacggt
tcgatgctaaccaaaggcgacaacgcagcagttactgctggtgaagttgtagctaactgg
gaagcgcatactatgccaatcatcactgaagtggcaggtcgtatccaattcgtagatatg
atcgatggtattacagtttctcgtcaaactgacgatctaacgggtctttcttcaagtgaa
gtaacagacgcagcagctcgcccagcagcgggtaaagatatgcgtccagctatcaaactt
gttgatgagcaaggtaacgacgtaatgatccctggtacagatatgccagctcactacttc
ctacctggcaaagcgattgtaaacatcgaagatggcgctgaagttggcattggtgacaca
ctatctcgtatccctcaaaaatcgagcggaaacaaagatatcactggtggtctaccacgc
gtagctgacctattcgaagctcgtaagcctaaagagcctgcgattcttgctgagcacaca
ggtactgtgtctttcggtaaagaaacgaaaggtaagcgtcgtctagtgatcactcgtgaa
ggcggtgacgcttacgaagagatgattcctaagcatcgtcaattgaacgtgtttgaaggt
gagaagattgaacgtggtgatgtaatcgccgacggtcctgaaactccacacgatatcctg
cgtctacgtggtatccacgctgtgactcagtacatcgcgaacgaagttcaagaagtttac
cgtttacaaggcgttaagattaacgataagcacattgagactatcgttcgtcaaatgcta
cgtaagtgtacaatcacccattctggtgactctcagttcctacctggcgaacaagttgag
taccacaatgttaagattgctaaccgtaaactagaagctgaaggtaaagaactagtacgt
ttcgaacgtgatctactaggtattactaaagcatctcttgcaactgagtcattcatctca
gctgcatcgttccaagaaacgactcgcgtactaacagaagctgcggtttctggtaagcgt
gatgaccttcgcggcctgaaagagaatgtaattgttggtcgtctgatcccagctggtact
ggtttcgcataccaccaagagcgtcaaaagcaacgtgaagaagagcaagaaggtccttca
gctgaacaagctactgacaatctagcagcacttctaaatgctggtttctcttcagaagag
taa
DBGET
integrated database retrieval system
