Vibrio cyclitrophicus: FAZ90_03905
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Entry
FAZ90_03905 CDS
T06393
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc03030
DNA replication
vcc03430
Mismatch repair
vcc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAZ90_03905 (dnaE)
03430 Mismatch repair
FAZ90_03905 (dnaE)
03440 Homologous recombination
FAZ90_03905 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcc03032
]
FAZ90_03905 (dnaE)
03400 DNA repair and recombination proteins [BR:
vcc03400
]
FAZ90_03905 (dnaE)
Enzymes [BR:
vcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FAZ90_03905 (dnaE)
DNA replication proteins [BR:
vcc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FAZ90_03905 (dnaE)
DNA repair and recombination proteins [BR:
vcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FAZ90_03905 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QCI70247
LinkDB
All DBs
Position
1:799998..803477
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGC
GVKPIIGADFVMQSPEFGDELTKLTILATDNKGYNNLTLLISKAYLRGHVQHQPVLDKEW
LIEHAEGLIILSGAKDGEIGKALLKGNRELVASSVEFYKTYFADRFYLELIRTGRPDEES
YLHFALELAEQEDLPVVATNEVVFLTEDLFDAHEIRVAIHDGFTMVDPRRPKNYSAQQYL
RSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGLAIEDFLIKKSEEGL
ERRLEFLFPDEKIRAERRPEYDERLKIELEVVNNMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFLAEPA
LPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLAKEGKDPVRIESIPLDDQASFNLL
QNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
VSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAEANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYRFNVDEDGAIVYGIGAIKG
VGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKLILSGALDRLGPHRAAMMA
SLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVPKWPEKVWLEGERETLGLY
LTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLFSDALDRYAELLEKDKIVVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGVSISIDQSQINGQFFERFGQILEPYRAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LLDELKQLLGNSQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccaaaatttgttcacctacgcgtacacagtgacttttcgatggtggatggc
ctatctaaggtgccaccattagtaaaaaaagtagctgaaatgggtatgcctgctctagca
cttaccgactttaccaacctttgtggcttggttaagttttacggtactgcccatgggtgt
ggggttaaacctattattggtgcggacttcgttatgcagtctccagaatttggtgacgag
ttaacaaagttgacaatactggccacggataacaagggttacaacaaccttactttattg
atctcgaaggcctatcttcgtggtcatgtacagcatcaacctgttctcgataaagaatgg
ttaattgagcatgcagaaggcctgattattttatcgggtgccaaagatggtgagattggc
aaagcgttactgaaaggtaaccgtgaacttgtcgcgagcagcgttgagttttacaaaacg
tatttcgcagatcgtttttaccttgagcttattcgtaccgggcgtccggatgaagagtct
tacctacactttgcattagaactggcagaacaagaagatttgcctgttgttgcgacgaat
gaagtggtgttcctaaccgaagatctttttgacgctcacgaaatccgcgtagcgatccac
gacggttttacaatggttgatccacgtcgaccaaaaaactacagcgcacagcaatacctt
cgtagcgaagaagagatgtgcgagttgttctctgatatccctgaagctctggaaaacagt
gtcgagattgctaagcgttgtaatgtaaccgttcgccttggcgaatacttcttgcctaac
ttcccaaccgaaggtttagcgattgaagacttcctgattaagaagtcagaagaaggtctt
gagcgtcgtttagagtttctattccctgacgaaaaaatccgagcagagcgtaggccagag
tacgatgagcgcctcaaaattgaacttgaagttgtcaataacatggggttcccaggctac
ttcttgattgttatggagttcatccagtggtccaaagacaacgatgtacctgttggtcca
ggccgtggttctggtgctggttctttggtggcttatgcattggatatcaccgatcttgac
ccacttgaatacgatctactttttgaacgtttcttgaacccagaacgtgtatcgatgccc
gattttgatatcgatttctgtatggataagcgtgaccaagtcattgatcacgttgcagaa
atgtatggccgtgatgctgtttcgcagatcatcaccttcggtaccatggcagcgaaagcg
gtaattcgagatgtaggtcgtgtgttaggccacccatttggctttgttgaccgaatttct
aagctagttccgcctgacccgggtatgacgctagagaaagccttcctcgctgaacccgca
ttacctgaactctatgatggtgatgaagaagttcgtgagctgattgataaatgtcgaatt
ctagaaggttgtacacgaaacgctggtaagcacgctgggggggttgtaatctcacccacc
acgattactgactttgcacctatttatgccgatgcggaaggtaacttcccagtaacgcaa
ttcgataagaatgacgtagaaaccgctggcttggttaagtttgacttcttggggttgcgt
accttaactattatcgattgggcattgggcttagtgaatccacgtttggcaaaagagggt
aaagatccggttcgtatcgagtcgattcctcttgatgaccaagcgtcgtttaacttatta
caaaattctgaaacgacggcggtattccagctggaatctcgcggtatgaaagacctgatc
aagcgtctacagcccgactgttttgaagatatcatcgcattagtggccttgttccgtccg
ggccctcttcaatcaggtatggtagataactttatcgaccgtaaacatggacgagaagca
gtatcttaccccgatgaaacgtggcaacacgagtcgttaaaagaaacattagaaccgact
tacggcatcatcctgtatcaagaacaggtaatgcaaatcgctcagattctggcgggttat
acgcttggtggagccgatatgctgcgtcgtgcgatgggtaagaaaaagcctgaagagatg
gcaaaacagcgcggtacctttaaagagggtgctgaagctaacggtgttgatggcgaattg
gccatgaagatctttgacttggtagagaagtttgcgggctacggcttcaacaaatctcac
tcggctgcctacgcattggtttcttatcaaacactatggctgaaaacgcactacccagcg
gaatttatggcggcggtaatgaccgcagatatggacaacacggagaaggttattggcctt
gttgatgagtgtttccgtatgaagcttaagcttcttccacctgatatcaattcaggccta
taccgattcaatgtcgatgaagacggagcgattgtttatggtattggtgcgataaaaggg
gtgggtgaaggccctattgaagcgattattgaagcgcgcaataagggcggttactttaaa
gatttattcgacttctgtgcgcgtcttgatctgaagaaggttaacaaacgtgttatcgaa
aagttgattctatctggagccttagatagattaggtcctcaccgtgctgcgatgatggcg
tcattgaaagatgcagttaaggctgcaagccaacatcaccatgctgagtcgtttggtcaa
tccgacatgtttggtgtgttgactgatgctccagaagaggttgaacacaagtatactcaa
gtacctaaatggcctgaaaaagtttggcttgaaggtgagcgagaaacactgggtttgtat
ttaacgggtcacccggtgaatgcttacatcaaagagttagcaaaatacaccagctgtcgt
ttgaaagatgctacgccaacgcgtcgtgaccaatcattaacgattgcaggcttggtcatt
gctgctagggtcatgaccacgaaacgcggtacacgaatcggtttaatgacacttgatgac
cgatctggccgaatggaagtgatgttgttctctgatgcactcgatcgctacgcagaattg
ctcgaaaaagacaaaattgtggtcgtttctggacaggtcagctttgatgacttcaacggt
gggcttaaaatgtccgcgcgcgaggtcatggacttaggaagcgcccgtgaaaaatatgct
cgtggggtatcgatatctatcgatcaatcccagattaatggtcaattttttgaacgcttt
ggtcaaatcttagaaccttatagagccggaacggtcccagtcaatgtatactaccaacgt
gccgacgctagagcgcggttaacattgggcacagaatggcgtgtgacgccaagtgataca
ttactagacgaattaaaacagctgcttggaaatagccaagtagaactcgaatttaactaa
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