Vibrio cyclitrophicus: FAZ90_04480
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Entry
FAZ90_04480 CDS
T06393
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vcc
Vibrio cyclitrophicus
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcc03016
]
FAZ90_04480 (rnd)
Enzymes [BR:
vcc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FAZ90_04480 (rnd)
Transfer RNA biogenesis [BR:
vcc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FAZ90_04480 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QCI70358
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All DBs
Position
1:919920..921038
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AA seq
372 aa
AA seq
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MDYQIITQLKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIAL
GEMTPFVGLLKDASVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAA
LVSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQ
QESDLQVAKRIRKANPDSAYLDIKGAWQLKPKQLAILRPLATWRLKEAIKRDLALNFVFK
EQDLWAVARFSMKDPKQMEQEGFDYRSVRRHGAKISSIVKLAEHTPEEEYPAPVERLMDY
PGYKQVFKVLKDEVKTASQHSGLATEFLASKKQLNQVLSWVWKHDRNPEKLPDVMQGWRL
EVVGEKLNKAIK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
gtggattatcaaatcattacccaattgaaagaccttgagcgagtttgccaacaagcacgt
gaagccgatgtcgttatgcttgatacggagtttgttcgtacaagaacctattaccctcaa
ttaggcttgattcagttatttgatggtgaaacgctgtcactgattgaccctattgctctt
ggtgaaatgacaccgtttgtagggttgttaaaagatgcttctgtcctaaaagtgctgcat
gcttgcggtgaagatttagaagtattccagaacgcatttggttgcacgccaactccaatg
gtcgatactcagatcatggcggcttttttaggtcatggcttatcaactggctttgctgct
ttggtttcagagtttgtcggtgttgatttagacaagagtgaatctcgcactgattggcta
gctcgtccgctttctcaaaaacagctcgattatgctgcggcagacgttcattacctaatg
cctatgtacaacaagcttctagaaaaagtgatggaagcaggctggtgggaagcggctcaa
caagagtctgatttacaagtggctaagcgtatccgtaaagcaaaccctgacagcgcttac
cttgatattaagggtgcgtggcagttaaagcctaagcagcttgctatcttaagacccctt
gcaacttggcgtttaaaagaagcgattaagcgcgatttagcgttgaactttgtattcaaa
gagcaagacttgtgggccgtggcgcgtttttcgatgaaagatcccaagcaaatggagcaa
gaaggttttgattaccgctctgtacgtcgccatggtgctaaaatcagttcaatcgttaag
ttagctgagcatactccagaagaagagtacccagcaccagtagaacgcttaatggactat
ccaggctacaagcaagtattcaaagtgttgaaagacgaagtgaaaacggcatcgcaacac
agtggtttagcaacggaatttttagcatccaagaagcaactaaatcaagtgttgagctgg
gtttggaaacatgaccgtaaccctgagaaattgcctgatgttatgcaaggctggcgttta
gaagtggttggcgagaagcttaacaaagcgatcaaataa
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