Vibrio cyclitrophicus: FAZ90_05095
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Entry
FAZ90_05095 CDS
T06393
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ90_05095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcc03019
]
FAZ90_05095
03009 Ribosome biogenesis [BR:
vcc03009
]
FAZ90_05095
Enzymes [BR:
vcc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FAZ90_05095
Messenger RNA biogenesis [BR:
vcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAZ90_05095
Ribosome biogenesis [BR:
vcc03009
]
Prokaryotic type
rRNA processing factors
FAZ90_05095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Colicin
Motif
Other DBs
NCBI-ProteinID:
QCI70470
LinkDB
All DBs
Position
1:complement(1058565..1061750)
Genome browser
AA seq
1061 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERA
QAHIQLIRPDFMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVES
RLRDAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLLPQKLDALKEAESKEPAEQTIRPKKLEEPALKGFAAPAQSA
PTPTPAPAPAPKAVEEKKAEPVTTQEPGLIGRFFKAIGSFLFGSSTQEEKKEEKQEEEKP
KSNRNNGNRQRRDRNDNRRRNQRGDRGEQRNERGEQRGERGDNRNENRDNKRRRKPARDE
KPEEQKEAAPQQTRQPRKPKQDRRNKPRDEQKQREEQVPSKLAEEGLQLAAEAQADKPEA
PKAKPEAKAVKIKERRQRRKLNKQVRVKDQQAQAEADNSSKEQVVAKEQSVAQEQKVAEQ
VEATQANSEQTEQEEPKQRRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAM
GKVMPRFVPKPHHKQAKPEVTEVQVSTETKVAVQEHNVAQDTAPQSNVVMAGGFACPELA
MGKVIIRRDDAAIIEQTATQQVNVEAQVTEAPAVIKEAPIAVETTKVETPVAEAPVVAKP
VQSEEATPVVEPEVAVETPNAESVKVEEVPVVKAEAPKAAPKAVVAKKQAGSPMTKAPGP
QEIKEIQVVAAPFRTERFVPKGAGSQAASNKAGAGMTKPQY
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctttggttgat
ggccagcgactgttcgatctagatatcgaaagtccaggtcacgagtcaaagaaagcgaat
atctacaaaggacgtattacccgtattgaaccaagcctagaagcggcatttgttgattac
ggcgcagaacgtcatggtttcctccctcttaaagaaattgcccgcgaatacttccctgaa
ggttatacataccaaggccgccctagcattaaagaagtgctaagagaaggccaggaagtg
atcgtacaagtagagaaagaagaacgtggtagcaaaggtgctgcactgacgactttcatc
tctttggccggtagttacttagttcttatgcctaataaccctcgcgctggcggtatttct
cgtcgtatcgaaggtgatgaacgcactcaactgaaagcagcattaagcactcttgaactt
cctcaaggtatgggcttaatcgtgcgtacagcgggtgttggcaaaagtgcagaagagcta
gagtgggacttgaatgttctattgaatcactggggcgctatcaagcaagcttctgattca
aacgcagcccctttccttattcaccaagaaagtaacgtaatcgttcgtgcgattcgtgac
tatctacgtcgtgatattggcgagattctaatcgacagcaacactatttttgaacgtgca
caagcgcacattcaattaatacgcccagatttcatgaatcgcgttaagaaatacgatggt
gaagtgcctctattcagccattaccagattgaaagccagatcgagtctgctttccaacgt
gaagttcgtcttccttctggtggttctatcgtaatcgatccaacagaagctctgacttct
atcgatatcaactctgctcgtgcaacaaagggcggcgatattgaagaaacagcgctaaat
actaacttagaagcggccgatgaaattgcacgtcagttacgtctacgcgacctaggcggt
cttgttgttatcgacttcatcgatatgactccggttcgccaccaacgcgaagtagaaagc
cgtctacgtgatgccgttcgtttagatcgcgcacgtgttcagattggccgtatttctcgc
tttggtcttctagagatgtctcgtcaacgtttgagcccatcactagcagaagcaagccac
cacatttgtcctcgttgtacaggtactggtgttgttcgtgataacgaatctctagcactg
tctgttctacgtttgattgaagaagaagccctgaaagacaatacagcgcaagtacttgct
gttgtacctgttccaatcgcttcttaccttctgaatgaaaaacgtcgctcagtaaaccac
attgagaagaaccaagaagttaagatcactgttgttcctaactcagacatggaaacgcca
cactttgaggttatccgtgttcgtgaaggtgaagagtttgatctactatcttacctactt
cctcaaaagctagatgcgcttaaagaagcggaaagcaaagaacctgcagaacagactatt
cgccctaagaagctcgaagagccggctctaaaaggctttgcagctccagctcaatcagca
ccgactccgactccagctccagctccagctccaaaagctgtagaagagaagaaagctgag
ccagtaacaactcaagaaccaggtctaatcggtcgtttcttcaaggctatcggtagcttc
ctatttggctcttcgactcaagaagagaaaaaagaagagaagcaagaagaagagaaacct
aaaagcaatcgtaacaacggtaaccgtcaacgccgtgatcgtaacgacaaccgccgtcgt
aaccaacgtggtgaccgtggcgaacaacgtaacgagcgtggtgaacaacgcggcgaacgt
ggtgacaaccgtaacgaaaaccgtgacaacaaacgtcgtcgcaaacctgcacgtgatgag
aaacctgaagagcaaaaagaagcagctccacagcaaactcgtcaacctcgtaagccaaag
caagatcgtcgcaacaagccacgtgatgagcagaagcaacgcgaagagcaagtaccatct
aaattagcagaagaaggtctacagctggcggcagaagctcaagctgacaagcctgaagcg
cctaaggcaaaacctgaagctaaagctgttaagattaaagagcgtcgtcagcgtcgtaaa
ctgaacaaacaagttcgagttaaagaccaacaagctcaagctgaagcagacaactcatct
aaagagcaagttgtcgcaaaagaacagtcagtagcacaagagcaaaaagttgcggaacaa
gtagaagcaactcaagcaaactctgagcaaactgaacaggaagagccaaaacaacgtcgt
aaccgtcgttctccacgtcatctacgtgcaagtggtcaacgtcgtcgtcgtggtcgtgat
cgtcgccctaacccattccgcctacgtaaaggtggcgtagcttctcctgagatggctatg
ggtaaagtaatgcctcgcttcgtaccaaagcctcatcacaaacaggcaaaacctgaagtg
actgaagttcaagtgagtacagagactaaagttgctgttcaagagcataatgttgctcaa
gatacagcaccacaaagcaacgtagttatggcaggtggctttgcgtgtcctgaactggct
atgggtaaagtaatcattcgtcgtgacgatgctgctattattgagcaaactgcaactcaa
caagttaacgttgaagctcaggtaactgaagctccagccgttattaaagaagctcctatc
gctgttgaaacgacaaaagttgaaactccagtagcagaagctcctgttgtagctaaacct
gtacaatcagaagaagcaacacccgttgttgaacctgaagtcgctgttgaaactcctaac
gctgaaagtgtaaaagttgaagaagttcctgttgtaaaagcagaagctcctaaagcggca
ccaaaggctgtggttgctaaaaagcaagcaggttcaccaatgactaaagcgccgggtcct
caagagatcaaagagattcaagttgttgcagctcccttccgtactgagcgttttgtaccg
aaaggtgcgggtagccaagcagcgtcaaacaaagctggcgcaggcatgactaagcctcaa
tactaa
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