Vibrio cyclitrophicus: FAZ90_05410
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Entry
FAZ90_05410 CDS
T06393
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vcc
Vibrio cyclitrophicus
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcc03032
]
FAZ90_05410 (topA)
03400 DNA repair and recombination proteins [BR:
vcc03400
]
FAZ90_05410 (topA)
Enzymes [BR:
vcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FAZ90_05410 (topA)
DNA replication proteins [BR:
vcc03032
]
Prokaryotic type
DNA Topoisomerases
FAZ90_05410 (topA)
DNA repair and recombination proteins [BR:
vcc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FAZ90_05410 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QCI70531
LinkDB
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Position
1:1133951..1136581
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AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTAGQSTGQKAAAVSTKGMSPED
KARIKKEKDRKALIKKMGINPYKEWEANYQILPGKEKVVAELQKLAENADHVYLATDLDR
EGEAIAWHLREIIGGDETRYKRVVFNEITKNAIQQAFETPGELNIDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFIPEEFWDVHADTKTAEKTDF
RLQVAQKDGVAFKPDNEAQTQAAVSVLEKAQYEVCKREDRPTKSKPSAPYITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSSEAVEAAREYIGSEYGAQYLPPKALV
YGSKEGAQEAHEAIRPSSVDVKSEDLNGVDADAHKLYSLIWNQFVACQMTPAQYDSTTVS
VKADEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQIGDKLDLIALDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVTDRLDGSFN
DLMNYDFTARMEQKLDQIAEGEASWKGVLDNFFEDFTGDLEKADLDEDAGGMKPNHIVET
DIECPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYVVEHGEFKVKGYDGPLVECDKCGS
DMVLKNGRFGKYMDCTSEDCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVEELVRFKDRISPKFQYLTSAPVADPDGKPTVIRFSRKTK
ENYVRTEVDGKPSGWTALYIDGKWEVTDKRKKPKEK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctcgttatagtggagtcgccagccaaggctaaaactatcaataaatat
cttggcaaagactttgtcgttaagtcgagtgtaggtcacgtacgtgatttaccaacggcg
ggtcaaagtactggtcaaaaggctgctgcagtttcaaccaagggtatgagcccagaagat
aaagctcgtatcaagaaagaaaaagatcgcaaagctcttatcaaaaagatgggtatcaac
ccatataaagagtgggaagcgaattatcaaattctaccgggtaaagaaaaagttgttgct
gaattgcaaaaactggctgaaaacgcagaccatgtttatctcgcaaccgatttggaccgc
gaaggagaagctatcgcatggcaccttcgtgagatcatcggcggcgatgaaacgcgatac
aagcgagtggtttttaacgaaatcactaagaatgctattcaacaagccttcgaaactccg
ggtgagctaaacattgacggcgtaaacgcacaacaagcacgacgttttatggaccgtgtt
gttggctttatggtgtcacctttgctttggaaaaaagtagcacgaggcctatccgctggc
cgtgttcaatcagtcgctgtaaaactactggttgagcgtgagcgcgagatcaacgctttt
atccctgaagagttttgggatgtgcatgctgataccaaaacagcagagaaaacagatttc
agactgcaagtcgctcagaaagacggcgttgcgtttaaacctgataatgaagcgcaaaca
caagctgcagttagcgttttagaaaaagcgcaatacgaagtctgtaaacgtgaagaccgc
ccaactaagagtaagccgtctgcaccttacatcacgtctacgctgcaacaagcggcgagc
acgcgtcttggttatggcgtgaagaaaaccatgatgctggctcaacgcctgtatgaagcg
ggttacatcacttatatgcgtactgactcaacgaacttgagttcagaagctgtagaagcc
gctcgtgaatacattggttctgagtacggcgcgcaatatcttccgcctaaagcactggta
tacggtagcaaagagggcgctcaagaggcccacgaagcgattcgtccttcaagtgtagat
gttaagtcggaagacctaaacggcgtagatgcagacgcacacaagctgtattcattgatt
tggaatcaattcgttgcgtgtcaaatgacacccgctcaatacgattcaacgacggtaagt
gttaaagctgacgagtacacgttaaaagcgaaaggtcgtattcttaaatttgatggttgg
actcgtgttcagcgtccaatgggtaagaacgaagatacaattcttcctgcagttcagatt
ggcgataagcttgatctcattgcgttagacccgaaacagcacttcactaagccaccagct
cgtttcactgaagcggcactagttaaagagcttgagaagcgtggtattggtcgtccttca
acatacgcatcaatcatctcgacgattcaagaccgtggttatgtaaaagttgaacagcgt
cgtttctacgctgagaagatgggcgaaattgttactgaccgactagatggcagcttcaat
gacctaatgaactatgacttcactgctcgtatggagcagaagttggatcaaatcgctgaa
ggtgaagcaagctggaaaggcgtgttagataacttctttgaagactttactggcgatttg
gaaaaagcagatttagacgaagacgcgggtggcatgaagccaaaccatatcgtggaaacc
gatattgagtgtccgacttgtggccgtaaaatgggtattcgaactgcctcgacaggcgta
ttcctaggttgttctggttacgcactcccaccaaaagagcgttgtaagacaacaatcaac
cttggtgatgaagaaggcattatcaacgtgcttgaagaagacgttgaaaccgcagctctt
cgagctaaaaagcgctgtcctatttgtgaaacggcaatggatgcttatctaatcgatgat
aagcgtaagatgcacgtatgtggtaataacccgaactgtgaaggttatgtggttgagcac
ggcgaatttaaagtgaaaggctacgatggtccacttgttgagtgtgacaaatgtggttct
gacatggttctaaagaacggtcgttttggtaaatacatggactgtacgagtgaagactgt
aagaacactcgtaagatcctgaaaaatggcgaagtagcgccaccgaaagaagaccctgta
catttccctgaacttccgtgtgaaaattcagacgcgtactttgttcttcgtgatggtgcc
tctggcctatttatggctgcgagcaacttccctaaatcacgtgaaacgcgtgcaccattg
gtggaagagttggttcgttttaaagatcgtatctcacctaagttccagtacctaacgtca
gcgccggttgctgaccctgatggtaagccgacagtgattcgttttagtcgtaagacaaaa
gagaactacgttcgtaccgaagtagacggaaaaccttctggttggactgctttgtatatc
gacggaaagtgggaagttacagataagcgtaaaaagccgaaagagaagtaa
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