Vibrio cyclitrophicus: FAZ90_09875
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Entry
FAZ90_09875 CDS
T06393
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FAZ90_09875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcc03400
]
FAZ90_09875
Enzymes [BR:
vcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FAZ90_09875
DNA repair and recombination proteins [BR:
vcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FAZ90_09875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
QCI71369
LinkDB
All DBs
Position
1:2184481..2187942
Genome browser
AA seq
1153 aa
AA seq
DB search
MTKQSIFTLPTLKGAGDKKHIGNLVGSSLALAIAKLAEQHNSHTLLAVPDPQIALKLQSE
IEQFTAAEVALFPDWETLPYDSFSPHQEIISDRIARLYALPTLKDGITIVPISTLLQRQS
PRDFLLQHTLMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLFPMGSKD
PYRIDFFDDEIDTIRTFDPENQRSIEDISEIRLLPAHEFPTSESAIEDFRIRWRQQFDAR
REPESVYMQVSKGTWPAGIEYWQPLFFEHTETLFDYVADEAQILILGDVETAVDAFLTDV
AHRYEQRGVDPLRPLLTPEQLWLKKDELFAHFKQKPQVSLSLDTIEEKAGRVNLPIAPLP
DLSVQHQNKEPLANLRKFTEAFDGKVVFSVESEGRREALSELLRGIKIRPSEVENLDAAI
KGKDKFSLILGSAEHGFIHEEQNIALICESDLLGDRVVQRRKKDKKSVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNDAKLYVPVASLNLIGRYSGGAE
DSAPLHKLGGEAWQKARKRAAEKVRDVAAELLDVYAKRELKPGYKFVLDRGQYATFKSGF
PFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVLVP
TTLLAQQHFENFRDRFANQPIRVEVLSRFKSAKEQKLIMQDVADGKVDILVGTHKLLSSD
LKFKDLGLLVVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRENDDAIVREAVLREIMRGGQVYFLHNQVDTIEKTAESLQKLIPEAR
VTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTILMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGREPSLDDLLREQTEIEMRLPALLPDDYI
PDINTRLSTYKRIASVSDTDELAELKVELIDRFGLLPDATKNLLSVSELKLSAASIKVKK
IEAHEKGGFLEFYPDADINPTYLVKLLQSQPQKFSMEGPTKFKFTVPLVDRRKRIQFVSD
LLGEFRQNLLPSA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgactaaacaatctatttttacattacctacactcaaaggagccggtgacaaaaagcac
atcggtaacctcgttggttcgtctctcgctcttgccattgccaaactcgcagagcaacac
aatagccatactttattggctgttccggacccacaaattgcgcttaaacttcaatctgaa
attgaacaatttacagcggcagaagttgctctatttcctgattgggaaacactaccatac
gacagcttctcgccacaccaagagatcatttctgaccgtatcgcgcgcctttatgcacta
ccgacactaaaagatggcatcacgatcgttccgatcagcacgctactgcagcgtcagtcg
ccgcgtgactttttgttacaacacactctaatggtaaaaacaggcgatctgtactcgtta
gagaaactgcgtcttcaacttgaaaagtcgggctatcgctacgttgatcaggtatttggc
cctggtgaatacgcaagccgtggttcgattcttgacctgttcccgatgggcagtaaagat
ccttatcgtatcgactttttcgatgacgaaatcgacacaattcgtactttcgatcctgag
aaccaacgatcgatcgaagacatttccgagatccgactgctgcctgctcacgagttccca
acctcagaaagtgccattgaagatttccgcattcgctggcgtcaacagttcgatgcccgc
cgcgaaccagaatctgtctacatgcaagtttctaaaggcacttggcctgctggtattgaa
tattggcagcccctgtttttcgagcataccgaaaccttattcgactatgttgccgacgaa
gcgcaaatcttaattctcggtgatgtcgaaactgcagttgatgctttcctaaccgacgtg
gctcaccgatacgaacagcgcggtgtcgatccattacgaccactgctgacacctgagcaa
ctttggctgaaaaaagacgaactattcgcgcatttcaaacagaagccacaggtcagtctg
agcttagacacgattgaagagaaagccggacgtgtcaatttacctattgcgcctctaccg
gatctcagtgttcaacatcagaacaaagagccactcgcaaacctaagaaagttcactgaa
gccttcgacggcaaagtggtcttttcggttgagtctgaaggccgccgtgaagccctaagt
gaattgcttcgaggcatcaaaattcgtccaagcgaagttgaaaacctcgacgcggcaatt
aaaggcaaagacaagttcagcctgatcctcggttctgctgagcatggctttatccacgaa
gagcaaaatatcgccctgatctgtgaaagcgacctgttgggtgatcgtgttgttcagcgc
cgcaaaaaagacaaaaaaagcgttaacagcgacaccgtcatccgtcatttggccgaactt
aaaccgggtcagcccgttgttcacattgaccacggtattggtcgctatattggcctgcaa
acattagaagccggtggaatgaaaaccgaatacgtaacgcttgagtatcaaaatgatgcc
aagctctacgtacctgttgcttctctgaacttaatcggccgctactctggtggcgctgaa
gattctgcaccgctacataaactcggtggtgaagcctggcagaaggctcgtaaacgagcg
gcagagaaagtccgtgacgttgcagccgaactgcttgatgtttacgccaagcgcgagcta
aaacctggctacaagtttgtactcgaccgtggccaatacgcgaccttcaagtcgggtttc
ccatttgaagagaccgatgaccaagcaatggcgatcaatgccgttatgtctgacatgtgc
caagcaaaagcaatggatcgcttagtgtgtggtgacgttggctttggtaaaaccgaagtc
gcgatgcgcgcggcattcgtatgtaccgacaacagcaaacaagtggctgtgttagtacca
acgacgctacttgctcagcaacactttgaaaacttccgcgaccgtttcgcgaaccaaccg
atacgtgtcgaagtgctatcgcgatttaagtcggctaaagaacagaaattgatcatgcaa
gatgtcgccgacggtaaagtcgacatcttagtgggtactcacaagttactttctagtgac
ctcaagtttaaagatcttggcttgttagtcgtcgatgaagaacaccgcttcggtgtgcgt
cagaaagagaaagtgaaagccatgcgtgcggatgtcgatatcctaacgctaaccgccaca
cctattcctcgtacattaaacatggcgatgagcggcatgcgtgacttatcaatcatcgca
acaccaccagctcgacgcttggcgataaaaaccttcgttcgcgaaaatgatgatgccatc
gtcagagaagcggtgctgcgtgaaatcatgcgtggtggtcaagtttacttcttacacaat
caagtagacaccattgaaaagacggctgagtcactgcaaaaactgatcccagaagcacgt
gtcactgttgctcatggtcagatgcgagagcgagagctagagcgcatcatgaatgacttc
taccatcaacgctttaacttgttggtttgtaccacgattattgaaaccggtatcgatgta
cctacggcaaacaccattttgatggacagagccgataatcttggattagcacaattgcac
caactgcgtggacgtgtgggtcgttctcaccatcaagcttatgcttacttgctaacgcca
catccaaaagcaatgacgaaagatgcaatcaagcgattagatgcgattgcttctttagaa
gacctaggcgcaggcttcaccctcgcaacccatgacttagagattcgtggtgcaggtgag
ctgttaggtgatgaacagagcggtcagattcagtcggtcggctttacgctttacatggaa
atgctcgaacaagccgttgaagcattgaaagagggtcgagaaccatcacttgatgactta
ttgcgtgaacaaacagaaattgagatgcgtctacctgcactattgccagacgattatatc
ccggacatcaatacccgcttgtctacgtacaaacgtatcgcgagcgtaagtgataccgat
gagttagccgagttgaaagtcgagttaattgatcgcttcggtcttctacctgatgcaacc
aagaacttgttatcggtttcagagcttaaattatccgcagcgtctatcaaggtgaagaaa
attgaggctcacgaaaagggtggattcttagaattctacccagacgctgacataaaccca
acctaccttgttaaactgttgcaatctcaaccgcaaaagttttcaatggaaggaccaact
aagttcaagtttacggtaccattggtcgacagacggaaacgaattcaatttgttagtgat
ctattgggcgaattcagacagaacttactgccatcagcataa
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