Vibrio cyclitrophicus: FAZ90_13170
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Entry
FAZ90_13170 CDS
T06393
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vcc
Vibrio cyclitrophicus
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcc03021
]
FAZ90_13170 (rapA)
Transcription machinery [BR:
vcc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
FAZ90_13170 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
NAT10_TcmA_helicase
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
QCI71967
LinkDB
All DBs
Position
1:complement(2912266..2915175)
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AA seq
969 aa
AA seq
DB search
MTFALGQRWISDTESDLGLGTVVAMDARTVTLMFAASEENRVYARTDAPVTRVTFNVGDV
IECQEGWSLSVEEIIEDKGLLTYLGTREDTQETEVTLREIFLSNQIRFNKPQDKLYAGQI
DRMDNFVLRYRALSNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLSGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCIEAFA
ESDNPFDTQQYVLCSLDFLRKSRKRYEQALEGEWDLLVVDEAHHLEWSQDKPSREYQVVE
GLAENTSGVLLLTATPEQLGRESHFARLRLLDPDRFYDYEAFVEEEDQYAPVADAVTALF
SGVKLENSAKNQITELLSEQDVEPLFRIIEGDSSEEEQALARQELIDNLMDRHGTGRVLF
RNTRAAIKGFPKRNVNLLPMEIPTQYTTSMRVSGMIGGKMAPEARAMKMLYPEEIFQEFE
GEDSSWWQFDSRVNWLIEKIQDKRSEKILVIASRASTALQLEQALREREGVRATVFHEGM
SILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQLRDIDIHVPYLKGTSQAILARWFDEGLNAFAETCPTGRTVYDKYSDVLIEMLASGN
TEQLDEVIEESAKLNQSLKSDLEKGRDRLLEMHSNGGDKAHEIAEKIASTDGDTNLVSFA
LSLFDTIGLNQDDKGENALVVTPSEHMMVPSYPGLPYEGATITFDRDTALSREDMNFISW
EHPMIQGGIDLLLSEGVGASAVSLLKNKALPVGTILLELVYLVDAQAPKRSGISQFLPKT
PIRLMMDGRGNDLSAQVEFDSFNRQLSPVNRHLASKLVNSVQGEIHKLIEAGETHVLPKV
EEVREQAQRDMQTNLNGELERLQALKAVNPNIRDEELEVIEAQINELTGYISKAQVQLDS
LRLIVVSHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgctttggggcaacgctggataagcgatacggagagcgatttaggtttaggt
accgttgtagcaatggatgctcgtacagtgacactaatgtttgcagcgtcagaagaaaac
cgtgtctatgcacgtactgatgctcccgtaacccgagtaacgtttaatgtaggcgatgtc
attgaatgccaagaaggttggtctttatctgtcgaagaaattatcgaagataaagggctg
ctgacgtatttaggtacgcgtgaagatactcaagaaacagaggtgactctgcgtgaaatc
ttcttaagcaatcaaatccgctttaataagccgcaagacaaactgtatgcgggccaaatc
gaccgtatggataactttgtgttgcgttaccgcgcgctaagcaatcaatatcaacaacac
aagagcccaatgcgtggcttgtgtggtatgcgagcaggcttaattcctcatcagctgtat
attgctcatgaggtgggtcgtcgtcacgctccacgtgttttgctggccgatgaagtgggt
ctaggtaaaaccatcgaagcgggcatgatcatccaccaacaagttttgtctggccgtgct
gaacgtattcttattgtggtacctgaaactctgcaacaccaatggttagtagagatgatg
cgccgtttcaatctgcacttctctatctttgacgaagagcgttgtattgaagcctttgca
gaatcagataacccattcgatacacaacaatatgttctgtgttctttggatttcctacgt
aagagccgcaagcgctacgaacaagcacttgagggtgagtgggatctgttggttgtcgat
gaggcgcaccaccttgagtggagccaagacaaaccaagtcgcgaataccaagtggttgaa
ggtttggctgaaaatacctctggcgtactgctactgacagcaacgcctgagcagcttggt
cgtgagagccactttgcacgtctgcgtcttctggatcctgatcgcttctacgattacgaa
gcattcgttgaagaagaagaccaatacgcaccggttgctgatgcagttactgcactgttc
tctggcgtgaagcttgaaaacagcgcgaagaaccagattactgaactgctttctgagcaa
gatgttgagcctttgttccgcatcattgaaggtgatagcagcgaagaagagcaagcgtta
gctcgtcaagaattgattgataaccttatggatcgccatggtacaggtcgtgttctattc
agaaacacacgtgctgcaatcaaaggtttccctaagcgtaatgtaaacttactgccgatg
gaaattccaacgcagtacacaacttcgatgcgcgtatctggcatgatcggcggcaagatg
gctcctgaagctcgtgcgatgaagatgctgtatccagaagagatcttccaagagtttgaa
ggtgaagactcaagctggtggcagttcgattcacgcgttaactggttgattgaaaagatc
caagacaagcgcagcgaaaagatcctagtaatcgcttcgcgtgcgagtacggctcttcaa
ttagagcaagcactgcgtgaacgtgaaggcgtgcgtgcaaccgtattccacgaaggcatg
tcgattctagagcgagataaagcggcggcttactttgctcaagaagagggcggtgctcag
gtgcttatctgtagtgaaatcgggtctgaaggtcgcaacttccagttcgctaaccaactt
gtgatgtttgatctaccgttcaacccagacttgcttgagcaacgtattggtcgtttggac
cgtatcggtcagcttcgagatatcgacattcatgttccttacctaaaaggtacatcacaa
gcgattctagcgcgttggttcgatgaaggtttgaatgcgtttgcagagacttgcccaacc
ggtcgcacggtttacgacaagtactcagatgttcttatcgagatgctagcttctggtaac
acagagcaattggatgaagtgattgaagagtcagcgaagctaaaccaaagcctgaaatca
gatttagaaaagggtcgagatcgcctactagagatgcattcaaatggtggcgataaagct
catgagattgcagaaaagatcgcgtctactgatggcgacactaacctagtttcttttgct
ctgagcctgtttgacaccattggcctgaaccaagatgacaagggtgaaaatgcgctagtt
gtaacgccgtctgagcacatgatggtgccaagctatccaggtttaccttatgaaggggca
acgattacgtttgatcgtgatactgcgctgtctcgtgaagacatgaacttcattagctgg
gaacacccaatgattcagggcggtattgatctgctactgagtgaaggtgtcggtgcatca
gcggtatcgctactgaaaaacaaagcgctgccagtgggtactatcttgctcgagttggtt
taccttgtggatgcgcaagcgccaaagcgcagcggtatcagccagttcttacctaagacg
ccaattcgtttgatgatggatggccgtggtaacgatttatctgctcaggttgagttcgac
agctttaaccgtcaactaagccctgtaaaccgtcacttagcgagcaagctagtgaactcg
gtacaaggtgagattcacaagctaattgaagcgggtgagacgcacgtacttcctaaagtg
gaagaagtgcgtgaacaggctcaacgagatatgcagactaacctgaacggtgaattagag
cgtctacaagcgcttaaagccgtgaaccctaatattcgtgatgaagagctagaggttatc
gaagctcaaatcaatgaactgacaggttacatcagcaaagctcaggttcaattagattca
ctacgtttgatagtggtttctcacaactag
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