Vibrio cyclitrophicus: FAZ90_16345
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Entry
FAZ90_16345 CDS
T06393
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ90_16345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcc03019
]
FAZ90_16345
Enzymes [BR:
vcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FAZ90_16345
Messenger RNA biogenesis [BR:
vcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FAZ90_16345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCI72627
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All DBs
Position
2:complement(260835..262451)
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AA seq
538 aa
AA seq
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MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL
EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL
RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ
NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKKKSAMLAKLIKD
NDWRQVLVFSKTKHGANKLARFLEEQDITAAPIHGNKSQGARTKALENFKTGKVRVLVAT
DIAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIER
LIQQVLERRELEGFSPVNKLPESRLDSRPIKPKKPKKPREHSDGQRSGENARRHKPAGKN
KRHVSGSGSAPKRKPNSAKKATDGNSAVATDDQSVRNNGSNYKRGNAANKPSVNNSGSQS
TLGKPNASGKPNNSGKPAGAGKPKKTGYVGSYGSNKPSANKPAANKPSRSRAKPAPQK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctcccttggcctttctgaaccgatccttaaagctattgaagcacaaggt
tacgataagccatcaccaatccaagagaaagccgtgcctgctgtcctaacgggcaaagat
gttatggccgctgctcaaacaggtacaggtaaaactgcaggcttcacgctacctattctt
gaaatgttatcaaaaggccctcgcgtacgtcagaaccaagttcgtgcgctagtgctaaca
ccaacacgtgagcttgctgcgcaagtgaacggcagcgtagttaaatacggtattaattta
ccgcttacttctaccgttgtgtttggtggcgtgaaaattaaccctcagatgcaaaaattg
cgtaaaggtagtgatgtgctggtggcaacaccaggtcgtctacttgacctatataaccaa
aatgctgtgcgttttgaccaacttgaaattctagtgctagatgaagctgaccgtatgcta
gacatgggcttcattcgtgatatccgtaaaatcttagcatttttgcctaagaagcgtcag
aacttactgttctcagcgactttctctgatgatatccgtagcctagcaaaaggcttggtg
aacaatcctgttgagatctcggtaagccctgcaaactcgacagcgaaaacggttgagcaa
agcatctacccagtagacaaaaagaaaaagagcgccatgctagctaagctgatcaaagat
aacgattggcgacaagtgttggtattcagcaaaacaaaacacggtgcaaacaagcttgct
cgtttccttgaagagcaagacatcacagccgctcctattcatggtaacaagagccaaggt
gcgcgtactaaagccttagagaactttaaaacaggtaaagtgcgagtgcttgttgcgacc
gatatagctgctcgtggtatcgatatcccacagctacctcaagtggttaacttcgatctt
ccgcatgtatcagaagactatgtacaccgtattggtcgtactggccgtgctggtgaagtc
ggtaaagcaatttcattggtgtgtgctgatgaagtgggtgagctgttcggtattgaacgc
ctgattcaacaggtgctagagcgtcgtgaacttgaaggtttctccccagtaaataagtta
cctgagtctcgactcgattctcgtccaattaagcctaaaaaaccgaagaagcctcgtgaa
cattctgatggccaacgttcaggtgagaacgctcgccgacataaaccagcaggtaaaaac
aagcgtcatgtctctggttcaggttctgctcctaagcgtaagccaaattcagctaagaag
gcgactgatggcaattcagccgttgcaacggatgatcagtcagtaagaaataatggcagt
aactataaacgcggtaatgcggctaacaagccttctgtgaataactcaggttctcaaagt
acattgggtaaacctaatgcttctggtaaaccgaacaactctggcaagccagcaggcgca
gggaaacctaagaagacaggttacgttggtagctatggttcaaataagccttcggcgaac
aagccagcagcgaataaaccatctagaagccgtgctaagccagcacctcagaaatag
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