Vibrio cyclitrophicus: FAZ90_20095
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Entry
FAZ90_20095 CDS
T06393
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vcc
Vibrio cyclitrophicus
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcc03016
]
FAZ90_20095 (rnb)
Enzymes [BR:
vcc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FAZ90_20095 (rnb)
Transfer RNA biogenesis [BR:
vcc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FAZ90_20095 (rnb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF7716
Motif
Other DBs
NCBI-ProteinID:
QCI73330
LinkDB
All DBs
Position
2:complement(1134046..1136052)
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AA seq
668 aa
AA seq
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MFQDNPLLAQLKQQIQETLPKKEGTIKATEKGFGFLEVDSKTSFFIPPPYMKKCVHGDKV
IAIIRTEKEREVAEPEELVEQGLTRFIARVKLFKGRLNVVPDHPQLKKLQLKAKAKKGLN
PETLKEGDWVVAHIVQHPLKGDNGFLAQISEKITDADDKIAPWWVTLAQNDLPNSEPEGI
DNWQINDDADLERVDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIADPTAYIS
PDDSMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSKDGVIGD
DINFFAANIKSHARLAYDHVSDWLETGTSEKWQPSEEIAVIISDLHQFAQARSAWRSTNA
VVFPDRPDYRFELSEDNDVVAIHADMRRSANKLVEESMISANICAGRVLKESFNQGVFNC
HSGFKAEKLADVLELVNPEAETPFTEEQIVSLEGFATLRRWLGSLDNSYYDNRIRKFQAY
SEISNEPAPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILGKAPIQTPDETIGDELAL
HRRHHGMAERNVGDWLYARTLANAPVNETRFQAEIFDINRAGMRVRLLENGAAAFIPGSL
IIDNKERIECNSDLGTVSIDKEMVYKLGDVLEVVLSEVNQENRNLVAKPTQVFADLPSEP
ETTNETEA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatcctctactcgctcagctaaaacagcaaatccaagaaaccctccct
aaaaaggaaggtacgatcaaagccactgaaaaagggtttggttttctcgaagtcgatagc
aaaacaagcttcttcattccgcctccatatatgaaaaaatgtgtacacggcgacaaagtc
attgcaatcattcgtacagagaaagaacgcgaagtagccgaaccagaggaattggttgaa
caaggtcttactcgcttcatcgcacgagtgaagcttttcaaaggtcgattgaacgttgtt
cctgatcacccgcaactgaaaaagctgcaactaaaagcaaaagctaagaaaggcttaaac
cctgaaacgctaaaagaaggcgactgggttgtcgctcacatcgttcaacacccattaaaa
ggtgataacggtttcttagctcagatctcagagaaaatcaccgatgccgatgacaaaatc
gcgccttggtgggtaacgttggcacaaaacgacctaccaaacagcgaacctgaaggcatc
gacaactggcaaatcaacgatgacgcagatcttgaacgcgtagacatgacgcacgtacct
tttgtgaccattgatggtgaaagcacgaaagatatggacgatgccctttacgccaagaag
aaagagaacggtgattttgaactgactatcgcgattgctgatccaacggcttacatctct
ccagatgattctatggataaagtcgctcgtgaacgtggcttcacgatttacctaccaggt
cgtaacatcccaatgttgcctcgtgacttggctgacaacttatgttcgctaatagagaac
gaagttcgccctgcactttgctgcacagtaacagtgtctaaagacggtgttatcggtgat
gacattaacttcttcgctgcgaacatcaaatctcacgcgcgtcttgcttacgatcacgta
tctgactggctagaaacaggcacatcagagaaatggcagccatcagaagagatcgctgtg
attatttctgaccttcaccaatttgcacaagcacgttcagcatggcgctctacaaacgct
gttgtgttcccagaccgccctgactaccgctttgagcttagcgaagataacgatgttgtc
gctattcacgcagacatgcgtcgcagtgcaaacaagttagttgaagaatcaatgatcagc
gcgaacatctgtgcaggccgagtactaaaagaaagctttaaccaaggtgtgtttaactgt
cactctggatttaaagcagagaaattagcagacgttctagaactggttaatccagaagcc
gaaacaccatttacagaagagcagatcgtttctctagaaggcttcgcaactttgcgtcgt
tggttaggttctttagacaacagctactacgacaaccgtattcgtaaattccaagcgtac
agcgagatcagcaatgaacctgcgccacactacgctatgggtttagacatttacgcaact
tggacttctccaattcgtaaatacggtgacatgattaaccaccgcatgcttaaagcacac
atcctaggtaaagcgccaattcaaacgccagatgaaacgattggtgatgaacttgctctg
caccgtcgtcaccacggtatggctgaacgtaatgtgggcgattggttgtacgctcgcact
ctagcaaacgctccggtaaacgaaactcgcttccaagctgagatattcgatattaaccgt
gctggcatgcgtgttcgcctacttgagaatggtgctgccgcgtttatccctggctctctc
attattgataataaagagagaatcgagtgcaacagtgatttgggtactgtatctatcgat
aaagaaatggtatacaaactgggagacgttttagaagtagttctctcagaagttaatcag
gaaaaccgtaacttagtagcaaagcctactcaagtttttgcggacttgcctagcgagcct
gaaacgacaaatgaaaccgaagcttaa
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