Vibrio cyclitrophicus: FAZ90_20100
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Entry
FAZ90_20100 CDS
T06393
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ90_20100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcc03019
]
FAZ90_20100
03009 Ribosome biogenesis [BR:
vcc03009
]
FAZ90_20100
Enzymes [BR:
vcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FAZ90_20100
Messenger RNA biogenesis [BR:
vcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FAZ90_20100
Ribosome biogenesis [BR:
vcc03009
]
Prokaryotic type
rRNA helicases
FAZ90_20100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QCI73331
LinkDB
All DBs
Position
2:1136361..1138457
Genome browser
AA seq
698 aa
AA seq
DB search
MESVSDWISIGIDRAPGTFCLLIYSGIPMSESVIQFNELALNDNILSALDSMGFVSPTPI
QAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHKPQAIIMAPTRELAIQVAA
EIKNLGRDINGLKVLEIYGGASIVDQMRALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHT
FVLDEADEMLKMGFVDDVTWILEQAPETAQRVLFSATMPPMVKTIVDRYLRNPARVDVAG
TNHTVDKVAQNFWVVKGVEKDEAMSRLLETEETDASIVFVRTRQDTERLADWLSARGFKA
AALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHR
IGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQLPLRDQVAAARVAKLGAELE
TEKESKALENFAGLISTLQESLEVDAATLAAMLLKRQQGKSPLFYVGEDPMIAAIERDKN
RRKERREDRDNGRDGGGRNFNTQDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGA
IKLDQGSTYVQLPKAMNSETAGKLSKLRIRQKEAGAVVVDFNDFREPRRGGGGRDGNRGG
RDGGRDGGRGGRDGGGYRGNREGGNREGGNREGGNGGRGGYRGNRDGARDGNSAGGRDGE
RRFDRNRGGDHRGNFRGERGHGNANGGNRGRRPERSEG
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagtatctgattggatcagtattggaattgatagagctcccgggaccttttgt
ttacttatatatagtgggatcccaatgtccgaatctgtaattcaatttaatgaattagcc
ctaaacgataacattctttcagctcttgatagcatgggtttcgtttctccaactccaatc
caagcagcagctattcctcttcttcttgaaggccgtgacgcactaggtaaagcacagact
ggtactggtaaaacagcagcattctctctgcctttgcttaacaaaatcaacctgaaccaa
cacaaaccacaagcaatcatcatggctcctactcgtgagctagcgattcaagttgctgca
gaaatcaaaaacttaggtcgtgacatcaacggtcttaaagttcttgaaatctatggcggt
gcttcaattgttgaccaaatgcgtgctctaagccgcggtgctcacattgttgttggtact
ccaggtcgtgttaaagatttactaactcgtgaccgtctacacctagatgaagcgcacaca
tttgttcttgatgaagcagatgaaatgctaaaaatgggttttgtagatgacgttacttgg
attcttgagcaagctccagaaactgcacaacgtgtacttttctctgcaactatgcctcca
atggttaagactattgttgaccgttacctacgtaaccctgcacgagttgacgttgctggt
actaaccacacagttgacaaagtagcgcagaatttctgggttgttaaaggcgtagaaaaa
gacgaagcaatgtctcgtcttctagaaactgaagaaactgacgcgtcaatcgtattcgta
cgtactcgtcaagacactgagcgtctagctgattggctatctgcacgtggcttcaaggct
gctgcactgcacggtgatattcctcagtctttacgtgagcgcactgttgatcacatcaaa
caaggtgttatcgatatcctagttgcaactgacgttgtagctcgtggtcttgatgttcca
cgcatcactcacgtatttaactacgacatcccattcgatgttgaatcttacattcaccgt
attggtcgtacaggccgtgctggacgtaaaggtaaagcgatcctactagttcgcacaaac
caaatccgtatgcttcgcactatcgagcgcgtgactaagtcatctatggaagaaatccaa
cttcctctacgtgaccaagttgctgctgcacgtgttgctaagcttggcgctgaacttgaa
acagagaaagaaagcaaagcactagaaaactttgcaggtcttatctctactcttcaagaa
tctctagaagttgatgctgctactctagctgcaatgcttcttaaacgtcagcaaggtaag
agcccactattctacgttggcgaagacccaatgattgctgctattgagcgtgataagaat
cgtcgtaaagagcgtcgtgaagatcgtgataacggccgtgacggtggtggtcgcaacttc
aatacgcaagattgggatacttaccaattacaagttggccgtgagcaaggtgttcaggtt
aaagacattgttggcgcactagcaaacgaacttggcctaactaaaggttctatcggtgct
atcaagcttgaccaaggttctacttacgttcaactgccaaaagcaatgaactctgaaact
gctggtaagctaagcaaacttcgtattcgccaaaaagaagctggcgctgtagttgttgat
ttcaatgacttccgtgagcctcgtcgtggcggcggtggtcgtgatggcaaccgtggcggt
cgtgatggcggtcgtgatggcggtcgtggcggtcgtgatggcggcggctaccgtggtaat
cgtgaaggcggtaatcgcgaaggtggtaaccgtgaaggtggcaatggcggtcgtggtggc
taccgtggcaaccgtgacggtgcacgtgatggtaactctgctggtggtcgtgatggcgaa
cgtcgctttgaccgtaaccgtggtggcgatcaccgtggtaacttccgtggcgaacgtggt
catggtaacgctaatggcggcaaccgtggtcgtcgtccagagcgcagcgaaggttaa
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