Vibrio cyclitrophicus: FAZ90_22365
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Entry
FAZ90_22365 CDS
T06393
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ90_22365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcc03019
]
FAZ90_22365
Enzymes [BR:
vcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FAZ90_22365
Messenger RNA biogenesis [BR:
vcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FAZ90_22365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_C_2
Helicase_RecD
P-loop_SecA
AAA_19
Reprolysin_2
Motif
Other DBs
NCBI-ProteinID:
QCI73732
LinkDB
All DBs
Position
2:complement(1628978..1630249)
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AA seq
423 aa
AA seq
DB search
MSESTKSFNQLGLSEHLLATLAELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAF
GLPIIQRLIETKDNIIPNPKLVRALVLVPTRELAQQVFDNVTEYAKGTDIKVVVAYGGVS
MKVQTDNLRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDEADRMLDMGFMPDIKRIL
SRMNEVRQTLFFSATFDNKIKAIAHRMMQSPSEIQVTPKNSTAETVTQMVYPVDKSRKSE
LLAYLIGSKNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSG
KVRALIATDVAARGIDIQQLEQVVNYDLPFKAEDYVHRIGRTGRAGNSGLAISLMSQDEA
YLLGDIERLLDTRLPQEWLEGFEPSLEKDVAPERGGRSKSRSSEKRKMKAKLKIHQNRGK
ARR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatctaccaaatcttttaaccaacttggattatctgagcaccttcttgctacg
ttagcagagcttaattttacggctcctaccagtgttcaagaacaagcgattccattggta
ttagaaggcaaagatgtattagctggtgctcaaacgggtacaggcaaaacagcggcattt
ggtttgccgattattcaaagattaatcgagaccaaagacaacattattccaaatccaaag
ttagtgcgtgcgcttgtgttagtgccaacgcgtgaattagcacaacaggtgtttgataac
gtaaccgagtacgcaaaaggtaccgatattaaagtcgttgtggcttatggaggcgttagc
atgaaggttcaaactgataacctgcgcggcggcgctgatattcttgtagcgacgcctggt
cgtcttattgaccatatgtttaccaaaaacatcatgctaagccataccgaagtattagta
ctggatgaagcggatcgcatgttagacatgggctttatgccggacattaagcgcattctt
tctcgcatgaacgaagttcgtcaaaccttgttcttctcagcaacgtttgataacaaaatc
aaagcgattgcacatcgtatgatgcagtcgccaagtgaaattcaagtcacgccaaaaaac
agtacagcagagacagttacccaaatggtttaccctgtagataaatcgcgtaagagtgaa
ctgttggcttacttaatcggatcgaagaactggcaacaagtgttggtgttcacgaaaact
aagcagggcactgatgctctagttaaagaacttaagctagatggcattaaagcggcatct
atcaatggtgataagagccaaggcgcgcgccaaaaagcattagacgattttaaatcgggt
aaagtacgagcgcttattgcgacagacgtagcagctcgtggtatcgatattcagcagtta
gaacaagttgtgaattatgacctgccattcaaagcagaagactacgttcaccgtattgga
cgaactggccgtgcaggtaacagcggtttagcgatatctttgatgagtcaggatgaagct
tatctcctgggtgacattgagcgattacttgatacacgcttgcctcaagagtggttagag
ggctttgaaccaagccttgaaaaagacgtggcaccagaacgagggggtcgtagtaagagt
cgttcatcagaaaaacgtaagatgaaagcaaagctaaaaattcaccaaaaccgcggtaaa
gcgcgacgctag
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