Vibrio cyclitrophicus: FAZ90_22615
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Entry
FAZ90_22615 CDS
T06393
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
FAZ90_22615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcc03021
]
FAZ90_22615
Transcription machinery [BR:
vcc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FAZ90_22615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QCI73777
LinkDB
All DBs
Position
2:1685433..1686329
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AA seq
298 aa
AA seq
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MNKDSFAAFQELTDHPPTKGSLTTTTEPYAYYLKDLVGIDLLSREDEVYYAKLNCAGDKK
ARDVMIESNLRLVVKIAKSYLKRKGNNFTLLDLIEEGNIGLIKAIDKYDPEPGYRFSTYA
VWWIRENIEAALMNKGRTVRLPAHVCKEINSLASKKLDISKKMSKEVSISELSSSSGVKA
ERVDKLVALSGFIDVTTTVGISHAPLVLEQCESECIPDPQQDCEDQSFTHALEQIINTLP
PKLQKVLIHRFGFFDNKVKTLSEVGEMLDVNVSNERVRQMQKEAIERIQKRLKFDGWV
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagacagttttgctgcgttccaggagctcacggatcaccctcctactaaaggc
tcattgactaccacgactgaaccctatgcgtattatctaaaggatcttgtgggcattgac
cttctatctcgtgaagatgaagtgtattacgctaaattgaattgcgctggtgataaaaaa
gcgcgcgatgtaatgatcgaatcaaacttgcgcctggttgtaaaaatcgcaaaaagttac
ctaaagcgtaaaggtaataacttcactctgctcgacttgatcgaggaaggtaatattggc
ttgatcaaggccatcgacaaatacgacccagaacccggctatcgtttttcaacctatgcc
gtatggtggattcgcgaaaacatcgaagccgcattaatgaataagggtcggactgtccgc
ttaccggctcatgtgtgcaaagaaattaatagcctcgcatcaaagaagttagatataagc
aaaaaaatgagtaaagaagtttctatctcagagctatcatcaagttctggcgttaaggct
gagcgtgtcgataaattggtggcgttaagcggatttattgacgtaacaacaacagtaggc
attagccatgctccacttgtgttggaacaatgcgaaagcgaatgcatccccgaccctcaa
caagactgtgaagatcaatcattcacacacgcgcttgagcaaatcatcaacacactgcca
ccgaaattgcagaaagttctcattcaccgctttggtttctttgataacaaggtgaaaaca
ctttcggaggtgggagaaatgttggatgtaaatgtgtctaatgaacgtgttagacaaatg
cagaaagaagcgatcgaaagaattcaaaaacgactgaaatttgatggctgggtctaa
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