Vanessa cardui (painted lady): 124529608
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Entry
124529608 CDS
T09161
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd04140
Autophagy - animal
vcd04142
Lysosome biogenesis
vcd04145
Phagocytosis
vcd04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
124529608
04142 Lysosome biogenesis
124529608
04140 Autophagy - animal
124529608
04148 Efferocytosis
124529608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vcd04131
]
124529608
Membrane trafficking [BR:
vcd04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
124529608
Hops complex
124529608
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
DUF4562
zf-RING_11
zf-C3HC4_2
zf_RING_Vps8_fungal
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
124529608
NCBI-ProteinID:
XP_046959364
LinkDB
All DBs
Position
5:860030..868229
Genome browser
AA seq
987 aa
AA seq
DB search
MTSIFDQYEQASQVSQRSVPASEQMTSSGYINMQLNDNTPMFSKQKMNFNPSDLITHVAV
SSDFLVLAMANGKLFRLDLKMPDQHEEIQYTKFVQPNSKLTSIFLDPLGYHLLMAFTARN
KDGNPELVYLHRKSSKLKTVTKSRNYEVTEVGWNYENKSTATTGPILLGTSQGHILETEL
EADSDKMFTASQQYWRQLPNYLPIYGGKEIDGLIFDIGKGTDTPITGIQFHRVSNTSKYF
IFVTTPTRLYQFIGNAMITDDKPSLQSIFYSYLTTPETGFQEIPSTLKYSKLQFYFDKTN
TPKTFAWLTEPGIFYGQLDPTSQQNSNSLFTQSELINYPSDDTNSKETTPISFVLTEFHA
VLMYSDRVKAVSLLNQDLVYEDKYSEVHGKLKNIVKDPIRRTIWAVTGNAVFRYKVSREE
RNVWRIYSDKEQFDLAKQYCQNNPAFIDIINVKQAELLFGKGDYDRSAEIYAETQSSFET
VCLKFLEVEQVNALKVYLGKRLDALDDDKTLISMIVIWMTELYLSQLGTLRRKGKADTQE
YHQIQSDFEVFLLQPKVVKCMQHIKSVVYDLMSSHGDKQNLIKLTVINEDYENVVAQNIY
KKSYIEALNMLLSLKKSDLFYQFAPALMEEVPKQTVNALIEQGPSLSPSKLLPAFLSCEN
DKAHVTEIIRYLEFMLQNFNVKDRAIHNYLLTLYVEHDQPALMRYLARQGQELSMVNYDV
HYALRLCREKGLSEACVKLSALLGLWEAAAELALGADVALAKSLAALPDDAALQRRLWLG
IAEHVITKNQDIKEAMSLLEECPLIKIEDILPFFSDVVTIDHFREPICQSLQEYNNQIEE
LKAEMEDATKSAEYVRGEIQSFRSRSVLVSVGDACCLCDIALLLRPFYLFPCAHRFHSDC
LLAEMAPILAPARRNKLTDLQRQLAVLSNIELSTVTSSGLPLREVLKNEIDDIVASECVF
CGEHMIACIDKPFIADEDWDRVMKEWE
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgatttttgatcaatacgagcaagcctcccaggtttcccagcgttctgtacct
gcatcagaacagatgacatcttctggatatattaacatgcagttaaatgataacacacca
atgttctccaaacagaagatgaatttcaatccatcagacttaataactcatgttgccgtg
tctagtgattttcttgtgcttgctatggctaatggaaaattgtttagacttgatttgaag
atgcctgatcagcatgaagaaatacaatacacaaaatttgtgcaaccaaactcaaaacta
acttcaatcttccttgatccacttggataccatctgctcatggcgttcactgcacggaac
aaagatggcaacccagaattagtatacttgcatcgtaagagtagtaagctcaagacagta
acaaaatctagaaattatgaagtgacagaagtaggttggaattatgagaacaagtctaca
gctacgacgggacctatactgctgggcacgtctcaagggcatatattggagacagagctt
gaagctgatagtgacaaaatgtttacagctagccaacaatattggaggcagctgcctaac
tatctgcctatatacggaggcaaggaaatcgatggtttgatattcgatattggtaaaggt
acagatacaccaataactggaatccaattccatagagtatcaaatacaagcaaatacttt
atatttgtcactaccccgacgagattgtaccagtttatagggaatgcaatgataactgat
gacaagccatcactccagtccatattctattcatatctgaccaccccagagactggattc
caagaaataccttcgacattgaaatattcgaaacttcagttctattttgataaaacaaat
actccaaaaacatttgcatggttgacggagcctggaatattttatgggcagttggatcca
acctctcaacaaaactcaaactcactttttactcaaagcgaactgattaattatccatcc
gatgatacaaatagtaaagaaacaacaccgatctccttcgttttaacagaatttcatgcg
gttctcatgtactcagatagagtcaaggccgtgtctctgctgaatcaagatctagtttat
gaggacaaatattcggaagtacatggaaagctaaagaatatagtgaaggatccaataaga
cggacgatttgggcggtcaccggtaacgccgtattcagatacaaagtcagtagagaagaa
aggaatgtttggaggatttactccgataaagaacaattcgatctagctaaacaatattgc
caaaataatcccgcattcatcgatatcatcaacgtgaagcaggccgagctgctctttggg
aaaggcgactacgacaggagcgcagaaatttacgcggaaactcagagcagcttcgagacc
gtgtgcctgaagtttctagaggtcgaacaagtgaatgcgttgaaggtttacctggggaaa
agattggacgccttggacgacgacaaaactctcatatcgatgatcgtgatctggatgact
gaactgtatttgtcccagctgggcacactgagacgtaagggaaaagctgatactcaagaa
taccaccaaatacaaagcgatttcgaagtgtttcttctacagccaaaagtggtgaagtgt
atgcagcacataaagtcagtcgtatacgatctcatgtcctcgcatggtgacaaacagaat
ctaatcaagttaacggtgatcaacgaggactacgaaaacgtggtcgcccaaaacatttac
aagaagtcctacatagaagctctgaatatgctactgtctctgaagaagtccgacttgttc
tatcagttcgctccagctctcatggaggaggtgccgaagcagacggtcaacgcactgatc
gaacaaggaccctctctgagtccctcgaaactcctaccggcgttcctttcgtgtgagaat
gataaggcccacgtgaccgaaattataagatacttagagtttatgttacaaaactttaac
gtgaaggatcgtgcgatacataattacttgctgacgctgtacgtcgagcacgaccagcca
gctctaatgaggtacctggcgaggcagggacaggagttgtcgatggtgaactacgatgtt
cattacgctttgaggctgtgtcgagagaagggtctgtcggaggcgtgcgtgaagctgtcg
gcgctgctggggctgtgggaggcggcggcggagctggcgctgggcgcggacgtggcgctc
gccaagagcctggccgcgctgcccgacgacgccgcgctgcagcgccgactgtggctcggc
atcgcggaacatgtgatcacgaagaatcaggacattaaggaagcgatgagtctccttgaa
gagtgtccgctcatcaaaatagaagatatcctgccgttcttcagtgacgtggtcaccatc
gaccactttagagaacctatttgtcaatctctgcaggaatacaataaccaaatagaggag
ttgaaggctgaaatggaagacgcaacgaaatcagctgaatatgtgcgcggcgagatccag
tcgttccgcagccgcagcgtgctggtgtcggtgggcgacgcgtgctgcctgtgcgacatc
gcgctgctgctgcgacccttctacctgttcccctgcgcgcaccgcttccacagcgactgc
ctgctcgccgagatggcgcccatactcgctccggcgcggcgtaacaagttaacagatctg
cagcgtcaactggcggtgctgtccaacatcgagctgtcaacggtgacgtcgagcgggctg
ccgctgcgggaagtgctcaagaacgagatcgacgacatcgtggccagcgagtgcgtgttc
tgcggcgagcacatgatcgcgtgcatcgacaaaccattcattgcggacgaagattgggac
cgggtcatgaaggaatgggagtga
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