Vanessa cardui (painted lady): 124529797
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Entry
124529797 CDS
T09161
Symbol
Top3alpha
Name
(RefSeq) topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03440
Homologous recombination
vcd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124529797 (Top3alpha)
03460 Fanconi anemia pathway
124529797 (Top3alpha)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcd03032
]
124529797 (Top3alpha)
03400 DNA repair and recombination proteins [BR:
vcd03400
]
124529797 (Top3alpha)
Enzymes [BR:
vcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
124529797 (Top3alpha)
DNA replication proteins [BR:
vcd03032
]
Eukaryotic type
DNA Topoisomerases
124529797 (Top3alpha)
DNA repair and recombination proteins [BR:
vcd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
124529797 (Top3alpha)
FA (Fanconi anemia) pathway
124529797 (Top3alpha)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
Zn_ribbon_recom
Zn_ribbon_Elf1
Motif
Other DBs
NCBI-GeneID:
124529797
NCBI-ProteinID:
XP_046959669
LinkDB
All DBs
Position
5:5526204..5537540
Genome browser
AA seq
1037 aa
AA seq
DB search
MKYLLKNDFLRKLLLVNNKNLVVISRFKTEIMKYLNVAEKNDAAKNIAMHLSRGTSRRRE
GLSQFNKIYEFESEVMGQKCQMVMTSVSGHLLGLEFVSAYKHWQSCNPLSLFDAPVFKHC
PENYEKIKKTLEREVRSCQGLIIWTDCDREGENIGFEIIDVCTAVKSNLKIYRAKFSEIT
SVSVWRALQNLAQPNKNISDAVDVRQELDLRIGAAFTRFQTLRLQKVFPATLAQNLVSYG
SCQFPTLGFVVERYRAIENFVTEMFWKIKVNHTMNNLSIDFSWERIRLFDQQACQVLHDI
CMENPQAKVTNVKTKPKSKWRPLPLDTVELEKLASRKLKINAKETMRIAEKLYTQGFISY
PRTETNEFPKEMNLGQLVAHQTGDPNWGAFAQNILDSGGPTPRQGNKSDKAHPPIHPTKY
ASNLSGNEQRLYEFIVRSFLACCSKDAQGQETTVNIEVARETFSASGLMITARNYLEVYP
YDKWSSKEIHVYETGQIFNPTSIDMLEGSTSPPNLLTEADLIALMEKHGIGTDATHAEHI
ETIKSRSYVTLADAHFVPGVLGMGLVEGYDAMGLALARPHLRAALEADLRAVSEGRKRAA
HVLAEQIAKYKEVYLTVTAEANKIDEALAGRLSEQAVEYTPTVETFVSLPPVFKCPKCNS
DMIVKQQKNNADKFYISCISYPKCKNAVWLPTIVKTIDVLPESCESCGPSYKKLKFEWRN
NSISHMYPPPYIGCIGGCDMTFLELLKVNISTVKNVSGNNRAPTTQSNVVTSTNNRNANT
IQTNTSVNRQNISNQPRQFVPPPTVNRAQNATTPSLSIPTNNNSTNPPRIQTASSTGSGE
ENNVFCGCNKPAILLTVRKQNANHGKKFYKCPAGLDNGGCDFFLWAPESGETVPNRSDTS
SSSSGYHSNSTTNTWGEPSSFPTNDTHQDDETVMCNCNMPCKRITVQKEGPNKGRPFYGC
SKDFSSRCTFFQWADGETNTEWRGATRGGGRGAARGAGRGAGRGGARGAARAEGGARRCG
LCRREGHTRNRCPDAET
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatctgttaaagaatgactttttacgaaagttattattggtaaacaataagaat
ctagttgttatatcgcgttttaagactgaaataatgaaatacctcaatgttgctgaaaaa
aacgatgccgctaaaaatattgcaatgcacttatcaagaggaacatcaagacggcgggaa
ggattatctcaatttaataagatttatgaatttgagtctgaggtcatgggtcagaagtgt
caaatggtaatgacttcagtgtcgggacaccttttgggcttggaatttgttagtgcctat
aaacattggcaatcttgtaatcctttgtctctctttgatgcacctgttttcaaacattgt
cctgagaattatgagaaaattaagaaaactttagaaagagaagtacgtagctgtcaaggc
cttattatatggactgattgtgatagagaaggcgaaaatattggtttcgagattattgat
gtttgtactgctgtaaaaagcaatcttaaaatatatagagctaagttctctgagataaca
tctgtgtctgtatggagagcactgcagaacttggcacaacctaacaagaatatcagcgat
gcagtggatgtcagacaagaattagatttacggataggtgcagcttttactagatttcaa
actcttagactacaaaaagtatttccagctacattagcacaaaatttagttagctatggg
tcctgtcagttcccgacattggggtttgttgtggagagatatagagctattgaaaatttt
gttacagagatgttttggaagataaaagttaaccatacaatgaacaatttaagtattgat
ttttcatgggaaagaatacgactatttgaccagcaagcctgtcaagtgctgcatgacata
tgtatggagaacccacaggcgaaggtcacaaatgtgaaaactaaacccaagtcaaagtgg
agaccattacccttggatacagtggaattagagaaattagcatctcgaaagttaaaaata
aacgctaaagagacgatgcgtatagccgagaaactgtatacgcaaggttttataagttat
ccccgtacggagaccaatgaatttcccaaggaaatgaatctgggacagcttgtagcacac
cagactggtgatcccaattggggagcattcgctcagaacattctcgatagtggcggacct
acaccgaggcaaggaaataaaagtgataaagctcatccccccatacacccaactaaatat
gcgagcaatttatctggcaacgagcagcgtctgtatgaattcatagtgcgttcgttcctc
gcatgttgctccaaggacgcacagggacaggagaccacagttaacatagaagtggctaga
gagactttcagtgcgagcggtctcatgataacagcgcgtaattacttggaagtgtaccca
tacgacaagtggtcgtctaaagagatacatgtatatgagaccgggcaaattttcaatccg
acgagtattgatatgctcgaaggcagtacttcgccaccaaatcttctaactgaagcagac
ctcatagcccttatggaaaagcatggcatcggtacggacgcgacgcacgctgagcacatc
gagaccatcaagagccgctcgtacgtgacgctggcggacgcgcacttcgtgcccggcgtg
ttgggcatggggcttgtagagggatacgacgccatggggctggcgctggcgcggccacac
ctgcgcgccgcgctggaggcagacctgcgcgccgtcagcgagggccgcaagcgcgccgcg
cacgtactagcggagcagatagcaaaatacaaggaagtgtatttgacagtaacggctgag
gcaaataaaatagacgaggccctggccgggaggctgtccgagcaagccgtagagtacacg
cctactgttgaaacctttgtatcattgccgccagtgtttaagtgtccaaaatgcaattcc
gacatgattgtaaaacagcaaaagaacaacgccgataaattttatataagttgcatttct
tatccaaaatgcaagaacgcagtctggctcccgacaatcgtgaaaacgatagacgttctt
cccgagtcttgcgaatcgtgtggaccgagttataagaaattaaaattcgaatggagaaat
aattccataagccacatgtacccgccgccatacatcggttgtataggcggctgcgacatg
actttcctagaattattaaaagttaacatttccactgttaaaaatgtatccggaaataac
agggcaccaactacacagtcaaatgtagtcacttccaccaataacagaaacgctaatact
attcaaacgaatacttctgtaaatcgacaaaatatctcaaatcagccaaggcaatttgta
ccgccacctactgtaaatagagctcaaaatgcaacgacacccagtctaagtataccaacg
aataacaatagcacgaatcctcctagaatacagacagcaagcagcacagggagtggcgaa
gaaaataacgttttctgtggctgtaacaaacctgctatattgctcactgtacggaaacaa
aacgcaaatcatggcaagaaattctacaagtgtccagcaggcttagataatggcggctgc
gatttcttcctctgggcacctgagtcaggcgaaaccgttccaaaccgatccgatacatcg
tcctctagttcaggataccacagtaactctactactaatacctggggggaaccgtcaagt
tttccgacgaacgatacccatcaggacgacgaaactgttatgtgcaattgcaatatgccc
tgtaaaagaataacagtacagaaagagggaccaaataaaggccggccattttatggatgt
tctaaagacttcagttcgcgatgcacttttttccaatgggctgacggtgaaacgaacaca
gagtggcgcggcgcgactcgcggcggcgggcgaggggcggcgcggggcgcggggcggggc
gcggggcggggcggggcgcggggtgcggcgcgcgcggagggcggggcgcggcgctgcggc
ctgtgccgccgcgaggggcacacgaggaaccgctgccccgacgcagagacctaa
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