Vanessa cardui (painted lady): 124530797
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Entry
124530797 CDS
T09161
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124530797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124530797
03041 Spliceosome [BR:
vcd03041
]
124530797
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124530797
Spliceosome [BR:
vcd03041
]
Complex B
Other components
Prp19-related factors
124530797
Complex C
124530797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_12
NRDE-2
Mad3_BUB1_I
ARM_TT21_C
PPR
DHR-2_Lobe_A
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
124530797
NCBI-ProteinID:
XP_046961059
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All DBs
Position
7:11290999..11294049
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AA seq
842 aa
AA seq
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MPLLDGKEIDIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKAAPKNEVNMIYERALKEL
PGSFKLWYNYLKLRRSQIRGRCVTDPAYDDVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITNTRKAFDSALRALPITQHHRIWPLYLKFLKKHYIPETAVRVFRRYLKLCPEDTEEYI
DYLISIEKLDEAAVKLAQLVNNENFQSKHGKSNHQLWNELCELISKNPDKIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEESIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKTNPTEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYESNDQIDDARLIFEKATQ
VNYAKVDDLASVWCEWAEMEIKHENYEEALKLMQRATVLPSRKVAYHDDKETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGTKLERARDLFEQCLEHCPPEFAKSIFLLYAKLE
EEHGLARHAMSVYERAATAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPDER
AREMCIRFSEMETKLGEIDRARAIYAHCSQMCDPRITAEFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTVSDLAPGMKDGMRMLEAKAAEMAVQSKG
NILFVRGETQGLKENDKVVNPDEIDIDEEESENSGDDDEEVAPVQKKDIPAAVFGGLLPE
KE
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgccattacttgatggaaaagaaattgatatattcttcagcgaagaagacttaccatat
gaagaagaaatattaaggaatcctttttccgtcaaacattggctgaggtatatagaacat
aaaaaagctgcacctaaaaatgaagttaatatgatttatgaaagagcacttaaagagtta
cctggctctttcaaactatggtacaattacttaaagttaagaagatctcaaattagaggt
cgctgtgtaactgatcctgcttatgatgatgttaataattgttttgaaaggtctttagtt
tttatgcacaaaatgcctagaatatggatggattactgtacttttctaactgaccagtgc
aaaataactaatacgagaaaagcatttgatagtgctttgagggcattacctattacccaa
caccacaggatttggccactgtatcttaaatttttaaagaaacattacattcctgaaaca
gcagtaagagtatttagaagataccttaagttatgtccagaagatacggaggaatatatt
gactatttaatatccatagaaaagttagatgaagcagctgttaaattagctcagcttgta
aataatgaaaatttccagtcaaaacatggaaaatccaaccatcaactctggaatgagtta
tgtgaacttatctctaaaaatcctgataaaattcattcgctcaatgttgatgctataatt
agaggtgggcttagacgctatacagaccaattgggacacttatggaactctttagcagac
tattatgtcagaagtggtttatttgaacgtgcaagagatatttatgaagaatctatacaa
actgtcacaactgtaagagattttactcaagtctttgatgcctacgctcagtttgaagaa
ctaagtttaagtaaaaaaatggaagaagttgctaaaaaaaccaatcctactgaagatgat
gatattgatttagaactgagacttgcaaggtttgaatatctaatggagcgacgattactt
ctgctcaattctgtgcttttaagacaaaatccacataatgttgctgagtggcataaaaga
gtaaagctctatgaaggaaaaccccatgaaataattgatacatatacagaagcagttcaa
acagttgaccccaaattagctgtaggtaaattgtatactttgtgggttggatttgctaag
ttttatgaaagtaatgatcaaattgatgatgcaagactgatttttgaaaaagcaactcaa
gtaaattatgctaaagttgatgatctagcatctgtgtggtgtgaatgggcagagatggaa
atcaagcatgaaaactatgaagaggctctaaaattaatgcagagagctactgttctacct
agtagaaaagttgcttatcatgatgataaagaaaccgtacaaatgcgtctttacaaatct
ttaaaagtgtggtctatgtatgctgatttagaagaaagttttggtacatacaaatcttgt
aaagctgtatatgatcacattattgatttaaaaatagcaacacctcaaataataattaat
tatggtcttttcttggaagaacataattatttcgaagaagcttttagagcatatgagaaa
ggaatagcactttttaaatggccaaatgtgtatgatatttggaatacatatttgactaag
tttttaaaaagatatggagggaccaaacttgaaagagcaagagatctatttgaacaatgt
cttgaacactgtccaccagagtttgcaaaatcaatattcttattatatgctaagttagaa
gaagaacatggtttggcaagacatgcaatgtctgtgtatgaacgggctgcaactgcagtt
cttcctgagcaaatgtttgaaatgtttaacatttatattaaaaaagctgctgagatctat
ggtgttccaaaaacgcgacaaatatatgaaaaagcaattgaaactcttcctgatgaaaga
gccagagagatgtgcatacgtttttcagaaatggaaacaaaacttggagagatagacagg
gctagagctatttatgcacattgtagccaaatgtgtgacccccgtatcacagctgaattt
tggaatacttggaaagaatttgaagtcagacatggaaatgaggatacaatgcgtgaaatg
ctcagaataaagagaagtgtacaagctacgtataatactcaagtgaacatgatgtcagct
cagatgttgagctcagctgcacaagcagctggtacagtatctgatcttgctccaggtatg
aaagatggcatgagaatgttagaggcaaaagctgcagaaatggcagttcaaagcaaaggt
aatatactgtttgtaagaggggaaactcaaggtcttaaagaaaatgataaggttgtgaat
cctgatgaaattgatattgatgaggaagaatccgaaaacagtggagatgatgatgaagag
gtagctcctgtacagaaaaaagatataccagctgctgtttttggaggtttacttccagaa
aaggaataa
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