Vanessa cardui (painted lady): 124530823
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Entry
124530823 CDS
T09161
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03020
RNA polymerase
vcd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124530823
09124 Replication and repair
03420 Nucleotide excision repair
124530823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcd03021
]
124530823
03400 DNA repair and recombination proteins [BR:
vcd03400
]
124530823
Enzymes [BR:
vcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124530823
Transcription machinery [BR:
vcd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124530823
DNA repair and recombination proteins [BR:
vcd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124530823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
124530823
NCBI-ProteinID:
XP_046961100
LinkDB
All DBs
Position
7:complement(11408237..11412077)
Genome browser
AA seq
1176 aa
AA seq
DB search
MYDTEDDQYEEEEVEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPPIELQAEAQHSSGEIETPPKYHLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIVKENEDPIETQHQKTFIGKIPIMLRSTYCLLSNLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMQGGKYAYKTEIRSCLEHSSRPTSTLWVNMM
ARGGQSIKKSAIGQRIVAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALSFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQ
KFIDKGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMIRDIRDREIRIYTDAGRICRPLLIVENGALLLKKKHIDQLKERDYNNYGWQNLVASG
VVEYIDTLEEETVMIAMSPDDLAQVKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQG
MRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRYSKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE
GLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQEYG
YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG
CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVVS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacacggaggatgatcagtatgaagaggaagaagtcgaagaaatttcttctgag
ctctggcaagaagcctgttggatagtaatcaacgcttactttgatgaaaaaggcttagtt
aggcagcagctagatagttttgacgagtttattcaaatgtccgttcagcgcatagttgaa
gattctcctccaatagaacttcaagctgaagctcaacattcttctggtgaaattgaaact
cctccaaaatatcatttaaagtttgatcaaatttatctttctaagccaactcactgggaa
aaagatggtgccccgtctcctatgatgcccaatgaagcgcgattacgaaatttaacttat
tctgctcctttatatgtcgatattacaaaaactattgttaaagaaaatgaagatccaatt
gaaactcaacatcaaaaaacatttattggaaaaattcctatcatgcttaggtcaacatac
tgtttgttaagcaatttgacggatcgtgatttaaccgaattaaacgaatgcccactagat
cctggtggctatttcataatcaacggctctgaaaaagttttaattgctcaagaaaaaatg
gccacaaacactgtctatgtgtttagtatgcaaggtggcaaatatgcatataaaactgag
attcgttcatgtcttgaacatagttctagaccaacatccacactgtgggtgaatatgatg
gcaagaggcgggcaaagtattaaaaaatcagctattggacaaagaattgttgcaattgta
ccatacattaaacaagaaataccaattatgattgtgtttagagctctcggttttgttgct
gatagagatatcttggaacatataatctatgattttgatgatccagaaatgatggaaatg
gttaaaccttcattagacgaggcttttgttatacaagaacaaaatgttgccttgagcttt
attggtgctagaggtgctcgacctggagtcactaaagaacggcgtattaaatatgcacga
gaaattttgcaaaaagaaatgttaccacatgttggagtttcagatttctgtgaaactaaa
aaagcttatttcttaggatatatggttcacagacttctgttagctgccttaggtcgccgt
gaacttgatgacagagatcattatggaaataaaaggcttgacctggctggaccgctatta
gcttttctgttcagaggactgtttaaaaatttattaaaagaagtaagaatgtatgcacag
aaatttattgacaaaggaaaggatttcaatttagaattagctattaaaacaaaaataata
actgatggcctaagatattccttggccacaggtaattggggtgatcaaaagaaagctcat
caagcaagagctggggtgtctcaagtgttaaatagattaacatttgcttcaacattatca
catttgcgccgtgtaaattcacctataggccgtgatggtaaattagcaaagcctcgtcaa
ttacataatactttatggggcatgatctgtcctgcagaaacacctgaaggagctgctgta
ggtttggtaaaaaatctggctttgatggcctacatttcagttggaagtcagccatctcca
atattagagttcttggaagagtggtccatggagaatttagaagaaatagcaccatcagcc
atagcagatgcaactaaaatatttgtaaatggttgttgggtaggaattcacagagatcct
gaacaactcatggcaacactacgtaagctaagacgtcaaatggacatcattgtctctgaa
gtcagtatgattcgagatatacgagacagagaaataagaatttacacagatgctggcaga
atttgtcgacctcttttgattgtggaaaatggagcattgttactcaaaaagaaacatatt
gatcaactcaaggaaagagactataataattacggatggcaaaatttggttgctagtggt
gtagtcgaatatattgatactttggaagaagaaactgtgatgatagctatgagccctgat
gacctggcacaagtcaaggaatatgcttattgtacaacatatactcactgtgaaattcat
ccagctatgatacttggtgtttgtgcctctattataccattccctgatcataatcaaagt
cctagaaatacctatcaaagtgctatgggtaaacaagctatgggagtatacattacaaac
tttcatgtcagaatggacacacttgctcatgtactttattacccacacaaacctttagtt
acaacaagatcaatggaatatctgcgttttagagaattacctgctggaatcaactcaata
gttgctatcttatgttacactggttataatcaagaggacagtgttatcttaaatgcttca
gctgtagaaagaggcttcttcagatccgtgttctatcgttcttacaaagattctgaatct
aaaagaattggcgatcaagaagaacaatttgaaaaaccgaccagacagacttgccagggt
atgagaaatgctctttatgacaaattagatgatgatggtattattgcccctggtatacga
gtatccggtgatgatgttgttattggcaaaacaataacactgccagaaaatgatgatgaa
ctggagggtaccactaaacgctacagcaaacgagatgcttcgacatttttgcgtaatagt
gaaactggtattgttgatcaagttatgcttacattaaacagtgaaggatataagttttgc
aaaattcgtgtacgttcagtacgtataccgcaaataggcgacaaattcgcgtctcgtcac
ggacaaaagggaacttgtggaattcagtatagacaagaagatatgccattcacttgcgag
ggtcttactcccgatatcataattaatcctcacgctattccatcccgtatgacaattggt
cacttgatcgaatgtattcaaggaaaagtatcatcaaacaaaggagaaataggtgacgct
acaccatttaatgatgctgtaaatgtacaaaaaatttcatccttgttacaagagtatgga
tatcatttacgtggaaatgaggttatgtataacggtcacacaggtcgaaaaattaatgct
caagtattcttggggcctacttattatcaacgtctcaaacatatggtcgacgacaaaatt
cattcgagagcaagaggaccagtacagattctagtaagacaacctatggaaggaagagct
cgtgatggtgggttgcgttttggagaaatggaacgcgactgtcagattgcccatggtgca
gcgcaattcttgagggagcgactatttgaagtgtctgacccgtatcgcatacacgtttgc
aatttctgcggtcttatagcaatcgctaatttacgaaataatacctttgaatgtaaagga
tgtaaaaacaagacccagatatcccaagttcgattgccgtacgctgctaaattgttattc
caagaactaatgtctatgaatattgcaccccgacttatggttgttagttaa
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