Vanessa cardui (painted lady): 124530876
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Entry
124530876 CDS
T09161
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03015
mRNA surveillance pathway
vcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124530876
09123 Folding, sorting and degradation
03018 RNA degradation
124530876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124530876
03041 Spliceosome [BR:
vcd03041
]
124530876
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124530876
mRNA cycle factors
Stress granule specific factors
124530876
Spliceosome [BR:
vcd03041
]
Complex C
Other components
Complex C specific factors
124530876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_occluded
Nup35_RRM_2
RRM_RdRP1_2
POP1_C
PABC_AtC3H46
TetR_C_29
Motif
Other DBs
NCBI-GeneID:
124530876
NCBI-ProteinID:
XP_046961224
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All DBs
Position
1:8303787..8306937
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AA seq
610 aa
AA seq
DB search
MNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPIDAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKMINNKAMYDTFS
AFGNILSCKVAQDENGGSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER
EKELGEKAKLFTNVYVKNFGEDFSDELLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFE
DPDAAERACLELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYV
KNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV
GTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGSAGGYFVPTIPPAQRFY
GPAQMTQIRPSTRWTAQPSVRPSTQAAASAYPNMQPPFRPAPRGPTQTALRTSLGARPIT
GQQGVAAASTIRAPLVTSGRSAGYKYTSNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQE
QKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVLQAH
QAKQQATKKD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctggaccgccaagctatcccatggcttcgctgtatgttggagatttacactcg
gacataactgaggccatgttgtttgaaaaattttctactgctggtccggttctctccatt
cgcgtgtgtagagatatgataacacgtagatctctaggttacgcttacgtaaattttcag
cagcctattgatgcggaaagagctttggatactatgaattttgatatgatcaagggcaga
cctattagaattatgtggtctcaacgtgatccatctctgcgcaagtctggcgttggaaat
gtttttattaaaaatctagataaaatgataaataataaggctatgtatgatactttctca
gcttttggcaatattttgagctgtaaagtagctcaagatgaaaatggtggttccaaaggt
tatggttttgttcattttgaaactgaagaggcggctaataaatctattgagaaagtaaat
ggcatgcttttgaatggtaaaaaagtttacgtcggtaggttcataccacgcaaagaacgc
gaaaaggaacttggagagaaagctaaattgttcacaaatgtttacgtcaaaaactttgga
gaagacttctctgatgagttattgagggatatgtttgagaagtatggccgaataacaagc
cataaagtgatgtataaagaagatggatcctccagaggatttggatttgtagcatttgaa
gacccagatgcagctgagagggcatgtctagagctaaatggtaaagaattagtagaaggt
aaaccactatacgtaggccgtgctcagaaaaaggcagaacgccaaaaagaattaaaacgc
aaatttgaacagttgaaatcggagcgattgactcgttatcaaggagtcaatttgtatgta
aagaacttggatgacactattgatgatgaaaggttgcgcaaagaatttgcaccatttggt
accataacttcagctaaggtaatgctagaagatggtcgcagcaaaggatttggatttgta
tgtttctcttctcccgaagaggcaaccaaagctgtcaccgaaatgaatggaagaattgtt
ggaacaaaaccactttatgttgctttggctcaacgtaaagaagatcgtaaagctcacctg
acttctcagtatatgcaacgtatggcaagtatgagaatgcaacaaatgggccaaatattc
caaccaggtagtgcaggtggttactttgtaccaactattcctcctgctcaaagattctat
ggtcccgcccaaatgacccaaatacgtccttcaacaagatggactgctcagccttctgtt
agaccaagtactcaggctgctgcttctgcttatcctaatatgcaacctcccttccgccct
gcgccgcgaggtccaactcaaactgctctacgcacatcattaggagccagaccaatcaca
ggacagcaaggtgtagctgctgcttcaaccattcgtgcaccactcgttactagtggtcgt
tcagcaggttataaatacacttcaaatatgcgcaatcctcctgctcctcagccagctgta
cacatccaaggtcaggaaccattaacttctactatgttagcagcagccccacttcaggaa
caaaaacaaatgctgggtgaacgactcttccctcttattcaacgaatgcatcccgacttg
gcgggtaaaataactggtatgcttttagaaattgacaactcagaactgcttcacatgcta
gagcatgcagaatcccttaaggcaaaggtagatgaggctgttgctgttttgcaagctcac
caagctaaacagcaagccacaaagaaggattaa
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