Vanessa cardui (painted lady): 124531015
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Entry
124531015 CDS
T09161
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03013
Nucleocytoplasmic transport
vcd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124531015
03015 mRNA surveillance pathway
124531015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124531015
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124531015
mRNA cycle factors
P-body specific factors
124531015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
SPX
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
124531015
NCBI-ProteinID:
XP_046961360
LinkDB
All DBs
Position
7:10841369..10848035
Genome browser
AA seq
1113 aa
AA seq
DB search
MTSQEKQVDNNEDPPADNTTPEDTEENDKLALSEYVSNLESRIKQKSELRNQNLNCVRPP
DNYFSKLDSGLKKNTTFVKKLKTFSATQVDILLKDLGALNLTKYISEVAAAIAEAKLKMS
DIPAAINLCSVVHQTYAEFSTFFFENWQKILTFKATDKIMNSSKLRVDLRFYAELIAVGI
FTNKMGLPLLGNVLTVLINMDKEDHNNIPILLSFCKHCGEDYAGLIPKKIKDIGEKYNLP
IPRNTFLPAEKQTAVRSLLKDYFLSLTKHLLAERSQLQALHAANQRTLHTRGELSQERKD
QLEQHQATYDKLLTGAQNFAEVLGEELGEAGEPPTLSLIVIETQGTVTIGGNEEIIMQAG
TDPWQDEDTRTFYTSLPDLKVFMPNYQMKEAVKSKTETVTEEMLDEDLKEDELSDGEEPP
VVADVEQEEAQPTNVSNKYALDAFLNELPNCINRELIDNAAVDFVLNLNTKNNRKKLTRV
LFSVARTRLDLLPFYSRFAAILYPVLPDVCVDLCQMLKQDFRYHVRKKDQINIESKIKVV
RFIGELVKFGLYSKIEALYCLKVLLHDFKHHHIEMACNLLETCGRYLYCNPDTHQRTMIY
LQQMMRKKIVSALDSRYVTQIENAFYYVCPPEAPAQPKEEEPPMHQFIRKILHEDLQKSN
EEKILRLMRKLNWDDPEVSSIAIQHLAGGWRVRASARRALARLTAELAAWQEAVAPAVVD
TILEEIRVTMEDPHPRYNQRRIATVRYLGELYNYKLLDSRDVFTVLYSFITFGVSNDHST
ISSLDPSDNVFRIRLVCALLETCGAYFNSGSSKKRLDYFLVFFQNYYWFKCSDPYWTEEN
KFPIYVKYIYQECLTSLRPKLTLFSDWQQCKDAIEEIRLTLYPELGEEEQCDNDDQGEDS
VADGLNTIIETDDETDNPTMHEESSDEDPVTENTGNDDNDVQPDEMAIEPRRPTPKPVED
VEFESAFEKMVMENIAERQRESRPQQRDIAVPMTCRQTTKKTYEQLLQGKEGVEFVLMVR
KGTKPQYKSFNAPPELASNLQQQALADKQEMERVKRLTLNISERQEEEEYSAESGGGSGG
SGNPNRGQHVRQKYQHPKGAPDADLIFGPKKFK
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgacttcacaagaaaagcaagtagataataatgaagaccctccagctgacaacacgact
ccggaggatactgaggagaatgataaactagcgctaagtgaatacgtatctaacctagaa
tcaagaataaaacagaaatcagaattgcgaaatcaaaatctaaactgcgtccgaccacca
gacaactacttttctaaactagattcagggttaaagaaaaatacaacctttgttaaaaaa
ttaaagacttttagcgcaactcaagtggatatactattgaaagatttaggagctcttaat
cttactaagtatatatctgaagtggctgcagcaattgcggaagcaaaacttaaaatgtca
gatatacctgcggctattaatctttgttctgttgtacaccaaacgtacgctgaattttct
actttcttttttgaaaattggcaaaagattttgacattcaaagcaacagataaaataatg
aattcatctaaattgcgtgtcgatttaagattctatgcagaattaattgctgttggtata
tttactaataaaatgggtcttccactcctgggaaatgttcttactgtcttaatcaacatg
gataaagaagaccataataatattccaatactgctgtcattttgtaaacactgtggtgaa
gattatgctggacttattccaaagaagattaaagatataggagagaaatacaatttacca
ataccaagaaacacttttttaccagctgagaaacaaacagctgttaggtctcttctcaag
gattattttctatctcttactaaacatctattagctgaaaggtctcagttacaagctctt
catgcagctaatcaaagaactttacacacaagaggtgaactatcacaagagagaaaagac
cagctagagcaacatcaggcaacatatgacaagttattaacaggtgcacagaattttgct
gaagtgctaggagaggaattgggagaagcaggagagcctcctactctttcactaatagta
attgagacccagggaactgtgactattggtggcaatgaagagattattatgcaagctggc
actgatccttggcaggatgaagatactagaacattttatacaagtcttcctgatctaaag
gttttcatgcctaattatcaaatgaaagaggctgttaagagtaaaaccgaaactgtgact
gaagaaatgcttgatgaagatttgaaagaagatgaacttagtgatggtgaagagcctcca
gttgtagctgatgtggaacaggaggaagcacaaccaaccaacgtatctaacaagtatgcg
cttgatgcatttttgaatgaattaccaaactgtattaatcgagaattaatagacaatgct
gctgtggattttgttttgaatctcaacacaaaaaataatagaaaaaaattaactagggtt
ttgttcagtgtagctagaacaagattagatctactgccattttattcacgatttgcagct
atattatatccagttctgcctgatgtgtgtgtagatctttgccaaatgttaaaacaagat
tttaggtatcacgtgagaaagaaagatcaaataaatattgaatcaaagattaaagtggtt
agatttataggtgaactcgtaaaatttggactgtattcaaaaattgaagcattgtactgt
ctaaaagttttactacatgatttcaagcatcatcatattgaaatggcatgtaatttgttg
gaaacatgtggtagatacttgtattgtaaccctgatacacatcaaaggaccatgatatac
ttacaacaaatgatgagaaaaaagattgtttcagctttagactcacgttatgttacgcaa
atagaaaatgcattttattatgtttgccctcctgaagcacctgcacaacctaaagaagaa
gagccccctatgcatcaatttattagaaaaattcttcatgaagatttacaaaagagcaat
gaagaaaaaatattaagacttatgcgaaaattaaactgggatgatcctgaagtttcatct
atagcaatacagcatttagctggtggatggagggtaagggcaagtgctagaagagcatta
gctcgtttaactgctgaattagctgcatggcaagaagctgtagcacctgccgtggttgat
acaatactagaagaaattcgagtgacaatggaggatcctcaccccagatacaatcaaaga
agaattgctactgtcagataccttggagagctgtataactacaaattgttagattcgcga
gatgtttttactgttctatactcctttattacatttggtgtaagcaatgaccatagcact
atatcttcattagacccttcagataatgtgttcagaataaggctagtctgtgctctgttg
gaaacttgtggtgcatatttcaacagtggatcaagcaagaaaagactagattacttttta
gtatttttccaaaactattattggtttaaatgttctgatccttattggactgaggagaac
aaatttcctatatatgtcaaatatatataccaagaatgtctgaccagcctgaggcccaaa
ttaactttgttttctgattggcaacaatgcaaagatgcaatagaagaaattagattgaca
ttgtatccagaattaggtgaagaggagcaatgtgataatgatgatcaaggagaagacagt
gttgctgatggcttaaatactattatagagacagatgatgaaactgataacccgacaatg
cacgaagaaagttctgatgaagaccctgttacagaaaacaccggtaacgatgataatgac
gttcaacctgatgaaatggctattgagccacgacgacctacgcctaaacctgttgaggat
gtggaatttgaatctgcatttgaaaagatggtaatggaaaatattgccgaaagacaacgt
gagagtagaccacaacaaagagatattgcagtgccaatgacgtgtcgacaaacgactaaa
aagacgtacgaacaattgttgcaaggcaaggaaggagtggaatttgttttgatggttagg
aagggtaccaaaccacaatataaatcttttaatgccccgcccgaactggccagcaatctt
caacaacaagccctggctgacaagcaagaaatggagagagtgaaacgtttaactttaaat
atatctgagaggcaagaagaagaagagtatagtgctgagagtggaggaggatctggcgga
agtggtaaccctaatagaggacagcatgttagacaaaagtatcagcatccgaaaggagct
ccagatgctgaccttatatttggaccgaaaaagtttaaataa
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