Vanessa cardui (painted lady): 124532534
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Entry
124532534 CDS
T09161
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03020
RNA polymerase
vcd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124532534
09124 Replication and repair
03420 Nucleotide excision repair
124532534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcd03021
]
124532534
03400 DNA repair and recombination proteins [BR:
vcd03400
]
124532534
Enzymes [BR:
vcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124532534
Transcription machinery [BR:
vcd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124532534
DNA repair and recombination proteins [BR:
vcd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124532534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
124532534
NCBI-ProteinID:
XP_046963439
LinkDB
All DBs
Position
1:complement(7999306..8008200)
Genome browser
AA seq
1892 aa
AA seq
DB search
MATTNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGSGHGGCGHYQPS
IRRQGLDLTAEWKHANEDTQDKKIIITAERVYEILKHITDEESFILGMDPKFARPDWMIV
TVLPVPPLAVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLTDNIRML
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMVRTHSTHP
DEEDDGPYNWISPGDTKVVVEHGELLKGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVK
LSNKAFEKKFKFDPTNERYLKRIFNEDIIKELTESGYVIGDLESEWEQLCKDREVLRQIF
PSGESKVVLPCNFKRMIWNVQKIFHINKRLQTDLSPIKVIQGVKDLLNKCVIVAGDDRLS
KQANENATLLFQCLVRSTLCTKFVSEDYRLSTEAFEWLIGEIETRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITDQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVGVGIYFGVGTPSMT
PLMTPWSNQNTPGYGASVWSPGQVGSSMTPGPSFSPSGASDASGLSPAYSSSWSPQPGSP
GSPGAPLSPYASPAGASPSYSPTSPVYAAPSPSLTSISPHYSPTGPSYSPTSPNYSPTSI
YSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSATSPSYSPT
SPTYSPTSPSYSPTSAVYSPTSPGYCSSPNYSPTSLVFSPGSHSYSPSSPNYTATPAQYS
PTSPSYSQTSAYSPASQSYSPSTLKYSPSPNYSPTSPSLAGSPSSPQYLPKSPQYSPSST
AYSPSSPQHPGSTQYSPSSSNYSPSSPNYSSTSPGYSPSSTKYSPTSPTYTSTSTNYSPT
SLAYSPSSAGPSYSPTTPNYSATSPTHDDDDD
NT seq
5679 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccacgaacgattctaaggcgcctttgcgccaagttaaaagagtacaatttggt
atattatccccagatgagatccgacggatgtcagtcacagagggaggcattcgctttcca
gaaactatggaaggtggaaggcctaagcttggtgggctcatggatcctcgacaaggggta
attgacagaagttccaggtgtcagacctgtgcaggaaatatgacagaatgtccaggacac
tttggacacatagatttagcaaaaccagtttttcacattggttttataacaaaaacaatt
aaagttttaagatgtgtttgtttttattgttcaaagctgctagtcagtccgacaaatcca
aagataaaggaagtagtcatgaaatcaaaaggacagccacgtaaaagattgacatatgtg
tatgatttatgcaaaggaaaaaacatatgtgagggtggggaggatatggatattggaaaa
gaaggagaagaaggtaaaaggggctcgggtcatggaggttgtggacactatcagccatct
attagacgacaaggtttagacctgactgccgagtggaaacatgctaatgaagatacacaa
gataagaaaataattataacagctgaaagagtttatgaaatattgaaacatattacagat
gaggagtcatttatcttgggtatggaccctaagtttgcccgtcctgactggatgattgta
acagttcttcctgttccaccattagctgtaagaccggctgttgttatgtttggttctgca
aaaaaccaggatgatttgacccacaaacttgctgatatcatcaaagcaaacaatgagtta
atgagaaatgaacaatcaggggcagctgctcatgttcttacagataatataagaatgtta
caatttcatgtggcgacatttgtagataatgacatgcctggaatgccaaaagctatgcaa
aagtcagggaaaccacttaaagcaattaaagctcgtttaaaaggtaaagaaggaaggatt
agaggaaatctcatgggaaagcgtgtcgacttttctgccaggactgtcatcacacctgat
cctaatttgcgtattgatcaagtaggagttccaagatctattgcgcaaaatttaacattc
ccagaattagtgacacctttcaatatagataggatgcaagaattagttagacgtggtaat
gctcaatatccaggagctaaatacatagtgcgggataatggagaaagaatagatttacga
ttccaccctaaaccctcagatttacatttacaatatggatataaagtagaacgtcatttg
agagatgatgatttggttatttttaatcggcaaccaactttacacaagatgagtatgatg
ggtcacagggttaaggtattgccatggtcaacatttcggatgaatttgagttgcacttcc
ccatacaatgctgattttgatggagatgaaatgaatttacatgtcccacagtctatggaa
actcgtgcagaggtagagaatatacatataactccacggcagattatcactccacaagca
aacaaacctgttatgggtattgtacaagatacattgacagctgtaagaaaaatgactaaa
agagatgtgtttttgactaaagaacaagttatgaatctacttatgttcttgccaacttgg
gatggtaaaataccacaaccatgtattttaaaaccacaaccactttggactggaaagcaa
atatttacactgattattcctggaaatgtaaatatggttagaactcattccacacatcca
gatgaagaagatgatggaccatacaattggatttctccaggagatacaaaagttgtagtg
gaacacggggagttgctgaagggtattctatgtaaaaaatcattgggtgcctcagcaggt
tccttgcttcatatttgtatgttagaactgggccatgaaactgctggacgtttttatgga
aatattcaaactgtgattaataactggctcctattggaaggtcactccattggtattggt
gatactattgctgatccgcaaacataccaagaaattcagcgtgctatagtcaaagctaaa
gatgatgtaatagaggttattcaaaaggcacataacatggagctagagccaacacctggt
aacacacttaggcaaacattcgagaaccaagtaaatcgtatccttaacgacgctcgtgac
aaaactggaggttctgctaagaaatctctaacagaatacaacaatctcaaggctatggtg
gttgcaggttccaaaggatcgaatattaatatttctcaggttattgcttgtgtcggtcaa
caaaacgtagagggaaagcgtattccatttggtttccgtaaaagaacattgcctcatttc
attaaagacgattatggtcctgaatcaagaggttttgtagaaaattcgtatcttgccggt
ttgacgccttcagaattctatttccatgctatgggtggtcgtgaaggtcttattgatacg
gctgtaaaaacagccgagacaggatatattcagcgacgtctaataaaggctatggagtct
gtcatggttcattatgatggcacagtccgtaactccgttggacagttgattcagttgaga
tatggtgaagatggattagcaggagaaacagtagaattccaaaatctaccaacagtgaaa
ctttctaataaagcatttgaaaagaaatttaaatttgatccaacaaatgaaagatatttg
aagagaattttcaatgaagatataattaaagaattaactgaatcaggttatgttatcggt
gatcttgaaagtgagtgggagcagttgtgtaaagatagagaagtacttcgtcaaattttc
cccagtggagaatctaaagttgtactgccttgcaatttcaagagaatgatttggaatgta
caaaaaattttccatattaataaaagattgcaaactgatttgagtccaattaaagttata
caaggtgttaaggatctgttaaataaatgtgttatagtagctggcgatgatcgattgtct
aaacaagccaatgaaaatgcaactttacttttccaatgtttagtcagatctacactttgt
acaaagtttgtttctgaagattatagactgtccaccgaagcatttgaatggttaatagga
gaaatagaaacacgtttccaacaggcccaagttaacccgggtgaaatggttggtgcttta
gctgctcaatcactcggggagcctgctactcagatgacattgaatactttccactttgct
ggtgtgtcatctaaaaacgtaactcttggtgtccctcgtctaaaagaaattataaatatt
tcaaagaaaccaaaagcaccgtctctaactgtctttcttactggaggtgcagcaagagat
gctgaaaaagctaaaaatgtgttatgtcgattggaacatactactttacgaaaagttact
gcaaatacggctatttattacgatcccgatccacaaaatacagttattgctgaagatcaa
gaattcgttaatgtctattatgaaatgcccgactttgacccaacaaagatttctccatgg
ttgttacgtattgaattagaccgtaaaagaatgacagataagaaattgactatggaacaa
attgcagaaaaaattaatgcaggttttggagatgatttaaattgcatcttcaatgacgat
aatgctgagaaactagtattacgtattagaattatgaataatgaggaaagcaaatttcaa
gacaatgatgaagaaactgttgacaaaatggaagatgatatgttcctcagatgtattgaa
gctaacatgttatctgatatgactttgcaaggtatagaagctatagcaaaagtgtacatg
cacttaccacaaacagaagccaaaaaacgtattatcattactgatcaaggtgaattcaaa
gctattgcagagtggttgttagaaactgatggtacttcattaatgaaagtactttctgaa
cgagacgtagatccaataagaacattcagtaacgacatatgcgagatattccaagtgcta
ggtattgaagctgtgcgtaagtctgttgaaaaggaaatgaatgctgtattacagttctac
ggcttgtacgtgaactaccgtcaccttgctttactttgtgacgtcatgactgctaaaggt
caccttatggccatcactcgacacggaatcaataggcaagacaccggagctctcatgaga
tgctcattcgaagaaacggtagatgtattacttgacgccgcaagtcacgctgaggttgat
ccaatgaggggtgtatctgagaacataattatgggtcagctacccaggatgggaactggc
tgtttcgacttattacttgatgctgaaaaatgcaaacatggaatggaaatgggaggtctc
ggtgtaggcatgggcgttggagttggaatatacttcggagttggaactccatctatgact
ccgttaatgacaccatggtctaatcaaaatactcctggatatggtgcatcagtttggtcc
cctggtcaagttggcagcagtatgactcctggaccatccttttcgccgtcaggcgcatcg
gacgcttctggattgtcaccggcttacagtagttcatggtcaccacaacccggttcacct
ggttctccaggcgctcccttgtctccttacgcttcacccgcaggagcatcaccgtcatat
tcaccaacaagcccagtctatgcggctccctcaccgagccttacttctatttcccctcat
tattcacctacagggccatcttattctccaacatctccaaattattcaccaacatctatt
tattctccaacttctccaagttattctccgacttcgccaggatattctcctacatccccg
tcgtattctccgacatcgcccagttattcgccaacttccccaagctattctccgaccagc
cctgcatactcaccaacatctccaagttattcagccacttctcctagttattcgcctaca
agtccaacttattcgccaaccagcccctcatattcaccaacaagtgcggtatactctcca
acgtctccgggatattgttcatcgcccaattattctccgacatctttagttttcagtcca
ggctctcatagttattctccgtcgtcaccaaattatacagcaacacctgctcagtactca
cctacaagtccttcttattcgcaaacatcagcttattccccagcctcacagagttactcg
ccgtcaacactcaagtactctccttctccaaactattcacctacctcgccatcgttggcg
ggaagtcccagcagtccgcaatatttacccaaaagtccacagtactcaccttcgagtaca
gcatattctccttcatcgccccaacatcctggaagtacacaatattcaccttcctcatcg
aactattcgccgtcttcaccaaattactcctccacatcaccaggctactcgccttcttct
actaaatattctccaacatcaccgacatatacgtcaacatctacaaattattcacccacg
tcactagcatattcgccatcttcggctggcccatcatactcacccacaacacctaactac
tccgcaacatcacccacacatgatgatgatgatgattaa
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integrated database retrieval system
