Vanessa cardui (painted lady): 124532775
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Entry
124532775 CDS
T09161
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03013
Nucleocytoplasmic transport
vcd03015
mRNA surveillance pathway
vcd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124532775
09122 Translation
03013 Nucleocytoplasmic transport
124532775
03015 mRNA surveillance pathway
124532775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124532775
03041 Spliceosome [BR:
vcd03041
]
124532775
Enzymes [BR:
vcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124532775
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124532775
Spliceosome [BR:
vcd03041
]
Complex C
Other components
EJC/TREX
124532775
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124532775
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124532775
NCBI-ProteinID:
XP_046963797
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All DBs
Position
10:10224870..10226539
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AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQADQQIADGATEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNHVYVLVMCHT
RELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEDVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDENDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaacgacgatcttctcgactacgaagatgaagagcaggcagatcagcagatt
gccgatggagcgaccgaagcggcgccaaaaaaagaggttaagggatcctatgtatcgatt
cacagttcaggcttcagagattttcttctaaaacctgaaattttgagagccattgtcgat
tgtggtttcgagcatccatcggaagtacaacatgagtgcattccgcaggcagtacttggt
atggacatattatgtcaagccaaatccggtatggggaaaaccgcggtctttgttttagca
acgctgcagcaactggagccttcggataatcatgtctacgtactcgttatgtgccacaca
agagaattggcgttccagatcagcaaagaatatgaacgcttctcgaagtacatgtccggt
gtcagagtgtcagtattcttcggagggatgccgattcagaaagatgaagatgtgttaaaa
acagcatgtccccacatcgtcgtcggaactccaggtcgaattttagcattagttaacagt
aagaaattaaatctgaaacacttgaagcattttatcctggatgagtgtgacaagatgctg
gaatcccttgacatgcgacgtgacgtccaagagatattccgcaacactcctcacggaaaa
caagttatgatgttttctgccacattaagtaaggaaatcaggccagtttgtaagaaattc
atgcaggatcctatggaagtatatgttgatgacgaagcaaaactaacattgcacggtctg
caacaacattatgttaagcttaaagaaaatgagaaaaacaaaaagttgtttgagctcttg
gatgtattagaatttaatcaagtggttatatttgttaagtctgttcaaagatgcatagca
ctcgctcaactcctgactgaccagaatttcccagctattggaattcaccgaaacatgaca
caagatgaacgtctttcccgttaccagcagtttaaggacttccagaagaggatattagtc
gccacaaatttgtttggaagaggaatggacattgaaagagtaaacattgtcttcaactat
gacatgcctgaagattctgatacatacctgcacagagttgctagagccggtagattcggt
accaaaggattagccataaccatggtgtcagatgaaaatgatgcaaagatacttaacgaa
gttcaagatcgctttgatgtcaacataacagagctgcccgaggaaattgaattgtcaact
tacattgaaggacgataa
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