Vanessa cardui (painted lady): 124532876
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Entry
124532876 CDS
T09161
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
vcd
Vanessa cardui (painted lady)
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcd03041
]
124532876
03016 Transfer RNA biogenesis [BR:
vcd03016
]
124532876
Enzymes [BR:
vcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124532876
Spliceosome [BR:
vcd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124532876
Transfer RNA biogenesis [BR:
vcd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124532876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
PGK
Motif
Other DBs
NCBI-GeneID:
124532876
NCBI-ProteinID:
XP_046963945
LinkDB
All DBs
Position
10:9597205..9614672
Genome browser
AA seq
728 aa
AA seq
DB search
MTAFEEFGVLSELGKAIDEMDWNLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWETLKDIQEGKTSKVISPVSTEWTMSLFDRTDALAVTPDGLRCQSRDQNGWHGCRA
TKGVHTKGAYYYEATVTDEGLCRVGWSTQAARLDLGTDSLGYGFGGTGKKSNAKNFEDYG
KAYGKNDVIGCYLNLNNGDITYTINGEDMGVAFKLNQSRRCDCYFPAIVLKNAEMSFNFG
STPFKYPPTGEYIGIAKASKDCVKQNIVSAVACTGAKQVNNAPQAIIIEPSRELAEQTCN
QITLFKKYLDNPKVRELLVVGGINVKDQINQLNSGVDIVVGTPGRLEDLIQGGYLALTHC
RFFVLDEADGLLKAGCGELIERLHRQIPKITSDGRRLQMVVCSATLHAFEVKKMAEKLMH
FPTWVDLKGEDAVPETVHHVVVNVDPQRDRGWETQRSQIMTDGVHAKDNIRSGNTTPETL
SEAVKILKGEYCVRAIREHKMDRAIIFCRTKLDCDNLERYLKSFKNEFSCVCLHGDRKPA
ERKANLEQFKQKQVKFLICTDVAARGIDISGLPFMINVTLPDEKSNYVHRIGRVGRAERM
GLAISLVSTVPEKVWYHGEWCSSRGRNCWNTNLIDDRPKGCCMWYNEPQYLADIEDHLNI
TIQQIETDMKVPCNEFDGKVVYGQKRTQVGSGYQDHVTQMAPVVRSLQELESQAQLYYLK
MHHNVAVA
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgtttgaggaattcggagtgctctccgaattaggcaaggctattgatgaaatg
gactggaatctgccaacagatgttcaggccgaagcaataccgcttattctaggcggcggt
gatgtgcttatggctgctgagaccggtagcggtaagaccggtgctttctgccttccaata
ttacagatagtttgggaaactttaaaagatattcaagaaggaaaaactagtaaggttata
tctccagtttcgacagaatggaccatgtcactattcgatcgaactgatgcgttagccgtc
actccagatggcttgcgatgtcaatctcgggatcagaatgggtggcacgggtgtagggct
actaagggtgttcacacgaagggagcctactattatgaagctactgtaacagatgaaggc
ttatgtcgtgtggggtggtctacacaagctgcaagattagatttgggcacagatagcctt
ggctatggttttggtggtacaggcaagaaatcaaatgctaaaaattttgaagactatggc
aaagcttatgggaagaatgatgttattggttgttacttaaatttgaacaacggcgacatt
acttatacaataaatggtgaggatatgggtgtagcatttaaattaaatcaatcaagacgt
tgtgactgctacttcccagcgattgtattaaagaatgccgagatgagcttcaattttggt
agcacaccatttaagtatcctccaacaggggaatatataggaattgcgaaggcttcaaaa
gattgtgtaaagcagaatattgtatcagccgttgcatgtactggagctaaacaagtcaac
aatgctccccaagctataattatagagccatcgagagaattagcagaacaaacatgtaac
caaataacattgttcaaaaaatacctagacaatccgaaagtaagggaactacttgttgtc
ggaggcatcaatgtcaaagatcagattaatcagttgaactctggggtggatattgttgtt
ggaacacccggcagactggaagatctcattcaaggaggttacttagcattaactcattgt
cgcttctttgtactggatgaggccgacggactcctcaaggccggctgcggcgaactcatt
gagaggctccacagacaaataccaaagatcacgtcggacggtcgccgcctacaaatggtc
gtttgctcggcaacattgcacgctttcgaagtcaagaaaatggcggaaaagttgatgcac
ttcccgacgtgggtggacctgaagggcgaggatgcggtgccggagaccgtgcaccacgtc
gtcgtcaacgtcgacccgcagcgcgaccgcggctgggaaacgcagcgcagccaaataatg
acggatggcgtgcacgcgaaagataatatccgcagcgggaacaccactccggagacgtta
tccgaggctgtgaagattctcaagggagaatattgtgtgagagccattcgagagcataaa
atggatagagcaattatcttctgccgcacaaaactagactgcgataacttagagcggtat
ctgaagtcatttaaaaacgagttctcgtgcgtgtgcctgcacggagaccgcaagcccgcc
gagcggaaggctaacttggagcagttcaagcagaagcaggtcaagttcctcatctgcacg
gacgtcgccgccagaggaatcgatatatcgggactgcctttcatgatcaatgtgacatta
ccggacgagaaatcaaactacgtgcatcgcatcggtcgagtgggtcgagctgagcgcatg
ggactggccataagtctcgtgtccactgtgccagaaaaggtgtggtaccacggcgaatgg
tgttcgtcacgaggtcggaattgctggaacactaatctaatcgatgacaggcccaaaggt
tgctgcatgtggtacaacgagccacagtacctagcggatattgaagaccatttgaatata
acgatacagcaaatagagactgatatgaaagtaccgtgcaacgaatttgacggaaaagtt
gtctatggtcaaaaaagaacgcaagttggttctggctatcaggatcacgtcactcaaatg
gccccggtggttagatccctacaagaattggagtctcaggcacagctgtattacctaaag
atgcaccataatgtggccgtggcgtaa
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