Vanessa cardui (painted lady): 124533456
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Entry
124533456 CDS
T09161
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vcd
Vanessa cardui (painted lady)
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcd03016
]
124533456
Enzymes [BR:
vcd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
124533456
Transfer RNA biogenesis [BR:
vcd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124533456
Prokaryotic type
tRNA splicing ligases
124533456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
124533456
NCBI-ProteinID:
XP_046964694
LinkDB
All DBs
Position
11:7327941..7330978
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AA seq
506 aa
AA seq
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MVVRQYNEELKYLEKINPHCWKIKKGFQPNMNVEGVFYVNNTLEKLMLDELRNSCRPGMT
GGFLPGVKQIANVAALPGIVGRSVGLPDIHSGYGFAIGNMAAFDTSNPKSIVSPGGVGFD
INCGVRLLRTNLHEKDVQPIKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KFAAGKMGLERIGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQIDVNDRQLACARIN
SVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFKMSPDDLDMHVIYDVSHNVAKIE
EHIVDGKVKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGSMGTCSYVLTGTHQGM
TETFGSTCHGAGRALSRAKSRRNIDYKDVLGKLEGMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagtcaggcaatataacgaagaattaaaatatttagaaaaaattaatccacattgt
tggaaaattaagaaaggctttcaacctaacatgaatgtcgaaggcgttttctacgttaat
aataccttagaaaagctcatgttagacgaattaaggaattcttgccggcctggcatgaca
ggagggttccttcctggtgttaagcaaatagcaaatgttgcagcattgccaggaattgtt
ggacgatctgtcggtcttccggatatacattcaggatatggatttgctattggaaacatg
gccgcttttgatacttctaatccaaagtcaattgtgtctcctggtggtgtaggttttgat
attaactgtggtgtacgacttttaagaactaatttacatgaaaaagatgttcaaccaatt
aaggagcaattagcccaaagtttatttgatcatattcctgttggagtgggctccaaaggc
atcatacccatgaatgctagagatttagaagaagctctagaaatgggcatggactggtca
cttagggaagggtatgtatgggctgaagataaagaacactgtgaagaatatggtcgcatg
cttaatgctgatccatctaaagtgagtttaagggctaagaagcgaggtttgccacaatta
ggaacccttggagctggtaatcactatgctgaaatacaagttgtggatgaaatttatgat
aaatttgctgctggcaagatgggcttagaaagaataggccaagtatgtgttatgatacac
tcaggaagtagagggtttggtcatcaagtagcaacagatgcacttgtacagatggaaaag
gctatgaaaagagatcaaattgatgttaacgatcggcagctagcctgtgccaggataaat
tctgttgaaggtcaagattatttaaaagccatggcagcagcagctaactttgcatgggtc
aatcgtagttcaatgacatttttaacacgtcaagcatttgccaaacaatttaaaatgtct
cctgatgatttagatatgcatgttatatatgatgtttctcataatgtagctaaaatagaa
gaacatattgtggacggtaaagtaaagactttacttgtccatagaaagggttccacaaga
gcttttcctccccatcatcctctaataccagtggattaccaattgactgggcaacctgta
ttgattggaggatcaatgggcacatgcagttatgtgcttacaggtactcaccagggtatg
acagaaacctttggatccacatgtcatggagctggccgcgctctatctcgtgctaaatct
agacgaaatattgattacaaggatgtattaggaaagttagaaggtatgggtatttcaata
agagtagcatctccaaaattagtaatggaagaagcaccagaatcctataaaaatgtgact
gatgttgtaaacacatgtcatgctgctggtatcagtaagaagactgttaaattacgtcct
attgctgtgattaaaggataa
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