Vanessa cardui (painted lady): 124533789
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Entry
124533789 CDS
T09161
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
vcd
Vanessa cardui (painted lady)
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vcd01009
]
124533789
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124533789
04131 Membrane trafficking [BR:
vcd04131
]
124533789
03036 Chromosome and associated proteins [BR:
vcd03036
]
124533789
Enzymes [BR:
vcd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124533789
Protein phosphatases and associated proteins [BR:
vcd01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124533789
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
124533789
Membrane trafficking [BR:
vcd04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124533789
Chromosome and associated proteins [BR:
vcd03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
124533789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
124533789
NCBI-ProteinID:
XP_046965297
LinkDB
All DBs
Position
1:2910439..2924796
Genome browser
AA seq
1127 aa
AA seq
DB search
MSDPPSAQTRRSAGDLKKTPPSSVVTRNGARKAKIQTRAMSAGVKVRMPSASVLAAKKKA
QQKKKQVVDTILRDPYQIAMESKLKIKGPTGFVTEPRMAEHRCLWDDKYPECPERLISVI
NRCKELNLIEQCKVLTPRAATREEIETLHSPTVIDMLESTHQNNDVAYLEDLSSKYDAIY
IHPSTHELALIAAGSTLELVSRVVSGELQNGAAFVRPPGHHAMRAEPCGYCFYNNVALAA
RHALQQGLERILIIDWDVHHGQATQQMFYDDPRVVYFSIHRYEHGSFWPSLRQADFHYTG
SGVGEGYNFNVPLNRTGMRDADYLAIWHQLLLPMALEFQPELVLISAGYDAAIGCPEFSP
QLVIISAGYDSALGDEKGEMEVSPACYAWLTQQVQCVCARVCVVLEGGYCPASLADGAAL
TLRALLALPAPAPPAPLGEPCDQIRESILNCIYAHKKHWRCFNYQPTYSTGPVPNVCDGQ
KLKHTVRVRWEGDETRPERFATRDCYPLQDDRTKREIQERLNHLRLVTELNPLKPVCYVY
DQAMLKHKNICEPGHVECPERIMRIHERLRDFGLLERLQRLEARRATDEEILAVHTRKHL
DRLKELSRTKLRDLNSQKDAYDSVYFHPDTFESASVASGCVLQVVEAVAGGRASRGACAV
RPPGHHADADSPSGFCVLNNAAVGAAHAVRALGLRRVLLVDWDVHHGNGTQSLTYAQPEI
LYISIHRYDNGTFFPNSKDADYTAVGEGRGEGFNVNIPWNKRGMGDVEYMAAFTQVVLPI
AYEYNPELVIVSAGFDACVGDPLGGCKVTPECFGRMTQFLTGLAGGRVVLCLEGGYNVTS
TAYAMAMCTKALLGDPILHHYDPKPVCHWSAIESINNVIRVQKKYWKSLKFQLALPIEDV
IEKPVPSRGLIVKEDASSSNVINNSKNQIEHSISCVENSMTNLNIGNKCADGIHCGTDDE
DEMESKSNASKSNENKTEQSSSNENKTPATLVDFLAENMQAIVDEEMFAVVPLQWCPHLE
SLYAIPADVKFEQGVKCVSCDHTDENWVCLHCYITACGRHVGGHMQEHYRSAQHALALSL
RDLSVWCSACDAYVDNALLYDAKNNAHRCKFQEDMPWCYPTDTIHMH
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctccaagtgcgcagacgcgccgttcagctggggatttaaagaaaacaccc
ccgtcttctgttgtaacaagaaatggtgcaagaaaagcgaaaattcagacacgtgctatg
tctgcaggtgttaaagtaagaatgccttcagcttcagtgctagctgccaagaaaaaggct
caacagaagaagaagcaagttgttgatacaatattgcgggatccttatcaaattgcaatg
gagtcaaaattgaaaataaaaggaccaactggttttgttacggagcctcgcatggcagag
catagatgtctgtgggatgataaatatccagaatgccccgaacggctgattagtgttatt
aacaggtgcaaagagttaaatttaatagaacaatgtaaagtattaacaccgagggcagct
acaagagaagaaatagaaacattacattctcccacagttattgatatgttagaaagcaca
catcagaacaatgatgttgcttacttggaagatttatcctcgaaatatgatgccatatac
attcatcccagcacacacgagctggctctgatagcggcgggctccacgctggagctggtg
tcgcgcgtggtatcaggcgagctgcagaatggagccgcgttcgtgaggccgcccgggcac
cacgccatgcgcgctgagccctgcggctactgcttctacaacaacgtggcgctggccgcc
cgccacgcgctgcagcagggattggagcggatattgatcatagattgggatgtacatcac
ggtcaggcgacacagcaaatgttttatgatgatcccagggtggtgtacttctccattcac
cgctacgagcacggctcgttctggcccagcctgcggcaggcggacttccactacacgggc
agcggcgtgggcgaggggtacaacttcaacgtgccgctcaaccgcaccggcatgagggac
gccgactacttggcgatatggcaccagctcctgctacccatggcgcttgagttccaaccg
gagctagtgctgatatcggcgggctacgacgccgctatcggctgtccagagttctccccg
cagctcgtcattatctccgcggggtatgactctgcgctcggcgatgaaaaaggcgagatg
gaggtgtcgccggcgtgctacgcgtggctgacgcagcaggtgcagtgcgtgtgcgcgcgc
gtgtgcgtcgtgctggagggcggctactgccccgcgtcgctggccgatggcgccgcgctc
acgctgcgcgcgctgctcgccctgcccgcgcccgccccacccgcacccctcggcgagccc
tgcgaccagataagagaatcgatcctgaattgcatctacgcccacaagaagcactggcgg
tgcttcaactaccagcccacgtacagcacgggccccgtgcccaacgtgtgcgacgggcag
aaacttaagcacacggtccgggtgcggtgggagggcgacgagacccgacccgagcgcttc
gccacccgggactgctacccgctgcaggacgaccgcaccaagcgggagatacaggaacga
ctgaaccatttgcgattggttacggaactgaatccactgaaacctgtctgttacgtctac
gaccaagccatgttgaaacataagaatatttgtgaaccaggtcacgttgagtgtccagaa
cggataatgcgtattcacgagaggcttcgggactttggcctcttagagaggctgcagcga
ttagaggccagacgcgctactgacgaagagatcctcgctgtccacacgcgcaaacattta
gacaggttaaaagaattatcgcgtacgaagttaagagatctaaacagtcagaaggatgcg
tacgactccgtatacttccacccggacacgttcgagagtgcaagcgtagcgtccggttgc
gtgctgcaggtggtcgaggcggtggcgggcgggcgcgcgtcgcgcggcgcatgcgcagtg
cggccgccgggacaccacgccgacgccgacagccccagcggcttctgcgtgctcaacaac
gcggccgtgggcgccgcgcacgccgtccgcgcgctcggcctgcgacgcgtgttactcgtc
gactgggacgtgcaccacgggaacggcacgcagagcctcacctacgcgcagcctgagatc
ttgtatatatctattcaccggtacgacaacggcactttcttcccgaactccaaagacgcg
gactacacggcggtgggggagggacgcggggaggggttcaatgttaatataccttggaat
aagcgcggaatgggtgatgtagaatacatggcagcgttcactcaagtggttctgccaatc
gcatacgagtacaatccggagctagttatagtttcggctggcttcgacgcctgtgtgggc
gaccctctgggaggttgcaaggtaacgccggaatgcttcgggcgtatgacccaattcctg
actgggctggcgggcggtcgcgtcgtgttatgtctggagggaggctataacgtcacaagc
acggcctatgcgatggctatgtgcaccaaagctctcctcggtgaccccatactccaccat
tatgaccccaaacctgtctgccattggtcagccatagaatctataaataatgttatcaga
gtacaaaagaaatactggaaaagtctcaagttccaacttgccctaccgatagaagatgtg
attgaaaaaccagtgccatctagaggattaatcgtcaaagaagacgcttcctcatctaat
gtaattaataattcgaagaatcaaatagaacacagtatatcatgtgttgaaaatagtatg
acgaatttgaacatagggaataagtgcgctgatggtatccactgtggtaccgatgatgaa
gatgaaatggaatccaagtcaaacgcttcgaaatcgaatgaaaacaaaaccgaacagagt
tccagcaatgaaaataagacaccagcgacattagtcgacttcttagctgaaaatatgcaa
gcaatagttgacgaagaaatgtttgcagtggttccgttgcagtggtgtccgcacttagaa
tctctttacgcgatccctgctgatgttaagtttgaacaaggagtgaaatgtgttagttgt
gaccacactgacgagaactgggtgtgcttgcattgttatattaccgcgtgcgggcgtcac
gtgggcggtcacatgcaagagcactaccgctcggcgcagcacgccctagcgctgtccctg
cgcgatctgtccgtgtggtgcagcgcctgtgacgcctacgtagacaacgcgcttctctac
gacgccaagaacaacgctcaccgctgcaagttccaggaagacatgccatggtgttacccc
accgatactattcatatgcactaa
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