Vanessa cardui (painted lady): 124534080
Help
Entry
124534080 CDS
T09161
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124534080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124534080
Enzymes [BR:
vcd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124534080
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124534080
mRNA degradation factors
3'-5' decay
Pan complex
124534080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
UCH
WD40_CDC20-Fz
Beta-prop_EML_2
PEP5_VPS11_N
WDR55
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_RSE1_2nd
zf-CCCH_2
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
124534080
NCBI-ProteinID:
XP_046965703
LinkDB
All DBs
Position
12:complement(10012290..10037220)
Genome browser
AA seq
968 aa
AA seq
DB search
MEFHYTDLGLQSEHIMEDQFQTKYSQPYILRNQEAEYEVRSTVLVDGGDQYGVSASVFDK
FEELVWMGNQGGHVTSYYGPNLQKYTSFQIHQTEEVRDILTLEKGIYCLTKTSLRHQIRR
GIPQHTHKSSNMMDMQCLFQVNSHKFLIGGHQDKLLELDINKMTETVIKVPEDGCAVLRS
GGGSLVACGSASGMVSLRDIRNPGKAEHTFRAHSACLSDLDMQGNHLITCGFTQSATVAV
PEPYVLVWDVRRVKGKAAWSIPTVSPPLLLHFVPAVSGRAVALAGDGHVTLFHVNEAHES
EYQSVFQVDTQTSQCSVMDVSSTSQALVFGDQSGHLHLFSAQHNHEPHFNNFSRATEFAD
PAPELPVVGFNDTTFQFSTVPLSPLASGSRWFNELPPDFFKKIYRKPKPIDPEVLKTMKM
QGPIGYAPNPKTHRRNEMPYVEDNLDNVKKNDASISIQPIPRHYLKIEIRFNKLLPSDED
IIVNKTGFPGLESTMPNSYCNAMLQVLYYIPPLKATLLAHTCAKEFCLSCELGFLFRTLD
TSGGAPCQASNFLRAFRTVPEAAALGLILPERAEPRADLVTLIQSWNRFILHQIHYEILE
TRKKEKELAFLAQKTSPPKPRINNTRQMNGQYEYQYNNDLEFLGPSEYEDELDEEQWRNN
HDEGTAVTNHVQNESNDVPNKQPSDNEESEISQLFAIGRQQVNKCMKCNKEEERVSAALA
CALGAGEARGGFADLVRASLCARRTTPAWCERCARFTPTTQHGRILRLPPILAINCGGVT
AHEKAYWAKGIQKDVPEASKRAGISKPCRYGLHCARPGCRFKHPERSILAPQCHSLKNST
QESNCVLPHQLHIRLQSDGEVIINDKTDSSTDRLADLNKHKKKPVTVRSEQDYHLSAVVV
CVEDNPKNLVSYVRIPDKKDESRWFLFNDLSIVQVSPDEVVQFGSWWKSPCVLFYSGARV
KPAHPDAS
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggaattccattataccgatcttggtttgcaatcggaacatataatggaagatcagttc
caaacaaaatattcacaaccatatattctgcgaaaccaagaggcagaatatgaggttcga
agtacagtacttgttgatggtggtgaccaatatggtgtgtcagcctctgtctttgataag
tttgaggaattggtatggatgggtaaccaaggggggcatgttacttcttattatggacca
aacttgcaaaaatatacatcattccaaatccatcaaacagaagaagtaagagatatacta
acattagaaaaaggtatatattgtctcactaaaacaagtttaagacaccaaatacgaaga
ggcatacctcagcacacacataaatcctcaaatatgatggacatgcaatgtctttttcaa
gtaaactcgcacaagtttttaataggtggacaccaagacaaactcctagaattagatatc
aacaagatgactgagactgtgataaaagtaccagaggatggctgtgctgtactgaggagc
ggaggcggttcattggtcgcatgcggcagcgcaagtggcatggtgtcattacgagacata
cgaaatcccggtaaagcggagcatacgttcagagcacactcggcctgtctctccgacttg
gacatgcagggaaatcatttaattacatgtggatttactcaatcagctaccgtagcagta
ccggaaccttatgtattagtttgggatgtcagaagagttaagggcaaagcagcttggtca
ataccgactgtgtctccaccgttgttgttgcactttgtaccggctgtgtccggacgggct
gtggcattggcaggggacggacatgttactctattccatgttaatgaagcccatgaatca
gagtaccaatctgtatttcaggtggacactcaaacatcacaatgtagtgtaatggacgtg
tcttctactagtcaagctctcgtatttggcgatcagtctggacatcttcacctattctct
gcccaacataaccatgagccacactttaacaacttttctagggcaactgaatttgcagac
ccggcaccggaacttccagtggtcggttttaacgacaccacattccaattctcaaccgta
ccactatctccccttgcatccggctcgaggtggttcaacgagttgcctccagacttcttt
aagaaaatttacagaaagccaaaaccaatcgatcccgaagtattaaaaacaatgaagatg
caaggtcccatcggatatgcgccgaatccaaagactcatagacggaatgagatgccgtat
gttgaagacaacttagataatgtaaaaaagaacgacgctagtattagtatacaaccgatc
cctagacattatttaaaaatagaaattcgattcaacaaactgttgccaagtgacgaagat
attatagtaaataaaactggctttccaggcttagaatcgactatgcctaattcatactgc
aacgcaatgttacaggtactatattacattccaccactgaaagctacactactggcgcac
acgtgcgcgaaggaattttgtctcagttgtgaattgggcttcctgttccgcacgctggac
acgtcgggcggcgcgccgtgccaggcgagcaacttcctgcgcgccttccgcaccgtgccc
gaggccgccgcgctcggcctcatcctgcccgagcgcgccgagccgcgcgccgacctcgtc
acgctcatacagagttggaatcgcttcattctacaccagatacattacgaaatactggaa
acgcgtaaaaaagaaaaggaattggctttcctagcacaaaaaacgagtcctccgaaacct
cgaattaataataccaggcaaatgaacggacagtatgagtatcaatataacaacgatctt
gagttcttggggccttcggaatacgaagatgagttggacgaggagcagtggcgtaataat
cacgacgagggtacggccgtaacgaatcacgttcagaacgaaagtaacgatgtaccgaat
aaacagccatctgataacgaggaatccgagatatcgcaactattcgccattggtcggcaa
caggtcaacaaatgcatgaagtgcaataaagaggaggagcgcgtgtcggcggcgctggcg
tgcgcgctgggcgcgggcgaggcgcgcggcgggttcgcggatttggtgcgcgcgtcgctg
tgcgcgcgccgcaccacgcccgcctggtgcgagcgatgtgcgcgcttcacgcccaccacg
cagcacggacgcatactcaggctgcccccaatcttagcaatcaattgcggaggtgtgacc
gcacacgaaaaggcttattgggcgaagggtatccaaaaggatgtgcctgaagcatcaaaa
agagctggtattagtaagccctgtcgttatggtttacactgtgcaagacctggctgtcgg
tttaaacatccggagaggtcaatattagcaccgcaatgtcattctctaaagaattcgaca
caagagagcaactgtgtgttgccacatcagttacacattcgactacaatccgatggcgag
gttattataaatgacaagactgattcatcgacagaccgactcgcggatcttaacaagcat
aagaagaaaccagtcaccgtgagatcagagcaggattaccatctgtctgcggtggtcgtc
tgcgtggaggacaatcctaagaacttagtctcgtatgtccggataccggacaaaaaggac
gaatcgagatggttcttgttcaacgacctgagcatagtccaagtgagcccggacgaggtg
gtccagttcggtagctggtggaagtctccttgcgttctgttctacagcggcgcgagggtg
aaacccgcccaccccgacgcctcatag
DBGET
integrated database retrieval system
