KEGG   Vanessa cardui (painted lady): 124534738
Entry
124534738         CDS       T09161                                 
Name
(RefSeq) RNA polymerase II elongation factor Ell
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
vcd  Vanessa cardui (painted lady)
Pathway
vcd03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:vcd00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    124534738
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:vcd01009]
    124534738
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vcd03021]
    124534738
Protein phosphatases and associated proteins [BR:vcd01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     124534738
Transcription machinery [BR:vcd03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     124534738
    Little elongation complex (LEC)
     124534738
SSDB
Motif
Pfam: ELL Occludin_ELL BRF1
Other DBs
NCBI-GeneID: 124534738
NCBI-ProteinID: XP_046966690
LinkDB
Position
13:complement(8325950..8372908)
AA seq 670 aa
MAALPAGVQYALSSESSYKENKELVFVKLTDSALKAIEDFIRNNRDKLAKPKIQFLPGNE
GKISIPAPSSGNGSSGESTFHFSINSNAEMEGPQGSFECVRGGGARRLESCGPLPRRMRV
QANDDSYEATKDRMSRTIAAEQSKCTRVIKPNQTDIGRRVKVRSTHPTYSNGPAAQLAER
LERAERPERPERPERPERPERPERPERQERQERPERAERPERQDRPERPERPERPERPER
PERPERQERQERPERPDRAERPERSERPERMERVERPAVAPPASRPQPAASAHPHPQPQQ
HPQPHPHQPQRPPPNPDLTRRPLKERLIQLLALKPFKKPELYARLMSEGLKEKERSMVNK
ILPEIGTLKDNCYHLRRHVWNDVNEDWPFYTEEEKRLLKRRKPQNLTPPLSSDSANSLSP
RASPGASKRAGASADDAPAAVKKQRISHYRRPSPPSSGYATTSSGERHASDNEDDRTTVK
KDNGYTLNFTTVKDLCPSPVKANGFSRSSPPVEQTSITEKDITNTEPLENTALTCAVPEE
NMTDLVDIERQYPPITSSSTRRAYKNEFATLYTEYQSLYERVAQVAALFTQLEHQLKCAE
PKSPQHRSIEQRIVEEYQRMRNDVAYQRDRRRVNYLHRKLNHIKRMVHQYDQLRNLKPER
VSAASTTQAY
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggcggccttgccagcaggtgttcagtatgcgttatcatcggagtctagttataaagaa
aacaaggaactagtgtttgtgaaattaacggattcagcattgaaagctatagaagacttc
attagaaataatagggacaaattggcaaaacctaaaatacagttcctacccggaaatgaa
gggaaaatctccattccggctccatccagtggtaatggatcatcgggtgaatccacgttt
cacttcagtatcaatagcaatgcagaaatggagggtccacagggttcgttcgagtgcgtc
aggggtgggggggcgaggcgcctggagtcgtgcgggccgctgccgcgaaggatgcgcgtg
caagccaacgacgactcctacgaggcgaccaaggaccgaatgtccaggactatcgccgcg
gagcagagcaaatgcacccgcgtcattaaacctaatcaaacggatataggtcgacgtgtt
aaagtgcgctcaacacatcctacgtactcaaatgggcctgcggctcagttggccgaacgg
ctcgaaagggccgaaaggccagagcgccccgaaagacccgaacgaccggaaaggcctgag
aggccggaacgacctgaacggcaagagcggcaagaacggcctgaacgagcggaaagaccc
gagaggcaagatcggcccgaacggccagaacggcctgagagacccgaacggccggaacgg
cctgagagacccgaacggcaagaacggcaagaacggcccgagcgaccagacagggccgag
cgccctgaacggtcggaaagacctgaaaggatggagcgtgtcgaaaggccggcggtcgca
cctcccgcgagtcgcccgcaacccgctgcgtccgcgcacccgcatccccaaccccaacag
cacccgcaaccacacccccatcaaccgcaacggcctccccccaatccagaccttactagg
cgacccttaaaagaaagacttatacaattattagcactgaaacccttcaagaagcccgaa
ctatacgcgagactcatgagtgagggcctcaaggaaaaggaacgtagtatggtgaacaag
atcctgcctgagatcggcacgctcaaggacaactgttaccacttacgtaggcacgtatgg
aacgacgtcaacgaggattggccattctatacggaggaagagaaacgtttgctcaagagg
cggaaacctcagaatctaacgccgccgctcagcagcgactcggcgaattcgctgtcgccg
cgcgcgtcgccgggcgcgagcaagcgcgcgggcgcgagcgccgacgacgcgcccgccgcc
gtcaagaagcagcgcatctcgcactaccgccgcccctcgccgccctcgtccggatacgcg
accacatcgtccggcgagcgacacgcctccgacaacgaggacgaccgcaccacggttaaa
aaggacaatggttacactctcaactttactaccgtgaaggatctctgtcccagtcctgtg
aaggcgaatggctttagtagaagtagtcctcctgtagagcaaactagtatcacagaaaaa
gacatcacaaatacggaacctttagaaaatacagctttaacgtgtgctgtgcctgaagaa
aacatgactgatttggtagacattgaaagacaatatccgccgataacgagctcgagcacg
cgtcgcgcgtacaagaacgagttcgcgacgctgtacacggagtaccagtcgctgtacgag
cgcgtcgcgcaggtcgcagcgctgttcacgcagctcgagcaccagctcaagtgcgccgag
cccaagtcgccgcagcaccggagcatagagcagcgcatagtggaggagtaccagcgcatg
cgcaacgacgtggcctaccaacgggacaggcggcgcgttaactacctgcatcggaaactt
aaccacatcaagcggatggtacaccagtacgaccaactgcgcaacctgaagccggagcgc
gtgtcggcggccagcacgacgcaggcgtactga

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