Vanessa cardui (painted lady): 124534911
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Entry
124534911 CDS
T09161
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
vcd
Vanessa cardui (painted lady)
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcd03041
]
124534911
Enzymes [BR:
vcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124534911
Spliceosome [BR:
vcd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124534911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
R3H
Helicase_C
DEAD
Ank_2
AAA_19
nSTAND3
AAA_22
AAA_25
HA2_N
T2SSE
Ank_5
Ank_4
SRP54
AAA_14
Zeta_toxin
UvrD-helicase
Cas3-like_C_2
NACHT
ATPase_2
Motif
Other DBs
NCBI-GeneID:
124534911
NCBI-ProteinID:
XP_046966911
LinkDB
All DBs
Position
13:2141972..2152008
Genome browser
AA seq
1357 aa
AA seq
DB search
MSSKKGKRNLGNKHFPIAESVSIALKIQLDKFLNDENETELQFPTFLSAQERGFIHETVA
KLGLKSKSRGKGVNRYLTIYKRVGSTIIQNDAKLILDSNMRCVIKEVFNAFPITAKEKED
LSLSPEKERAPQLIHKTLGQLNNGVAQIPNTTYNPDLLKFREKLPVYEQRQDLLNAILHN
QVIIVAGATGCGKTTQLPQLVLDYCQEHKQPARIYCTQPRRISAVSVAERVAYERMEKIG
QSIGYQIRLESRVSPRTVLTYCTNGVLLRTLMGGDTALTGVTHVLVDEVHERDKFSDFLL
VALRDALGRLKDLKLVLMSATMDTQIFSRYFNNCPVITIPGRLHEVQRYYLEDILKMTKY
TTKKMVQVERELKAKLKSGQSYWSHLEGQKQNTEEINKDEKETIDPALQADMDEFLDECF
NEGSLDSFSQLLYMFVSEGVPASLAHSRCGRGALAGAALRGLRDVAEQLLRIGADPTLKD
KSGKTPYDHAVENGHTECAKLLATFDRSEEAKSGQEEDTSADDFLLDVYNHAFSEELIDH
DLMLALVRHIHMNMPKGSILIFLPGYDDIVALRDLIQGCTEMNVMKYQIFTLHSNMQTLD
QKKVFNPLPNARKIIISTNIAETSITIDDVVYVIDSCKVKEKYYESNGGVCSLQCVWTSR
ACCQQRAGRAGRTKPGHCFHMCSKRRFKTLPLNSVPEILRVPLQELCLHTKLLAPGNTPI
ADFLAKALEPPSFLAVRNAVTLLKTIGALTSMEDLTEIGQHLLDLTVEPKLGKMLLYACV
MKCLDPILTIVCSLANKEPFQISMNPENRKKGGLARKEFAADCFSDHMALLRAFQAWQAA
RANGTEKAFCAKYLICGATMEMIVGFRSQLLAQLRALCLVKARGSGDIKDVNINSEKWHV
VKAVLVSGLYPSIARVDRDSSTLRTSKEVKVAFHPSSTLHRGGGVTGSQKSVQNLPTDWV
VFEEISRVGRFCFIRCNTLVTPLTVALFGGPLRLKSGAFTQRANPPGLSSDSDSEADENN
SSPDTAVLTLDDWMAFTADASDAISVYYLRQKLSALVLRRMSNPAKPMSPLDEQILSTVV
HVIGAEEKNIGLIQPSGIGQRPKPLTLDSPNWRMRVDEEQYRHENKYYPQYGQNDYGNNY
YQNNYGYRNGQRPGWRSDGMPQGFSPQSYSGPKSPMSPNGKLLLANIEKYAEASDGSVRY
FVAKADDVHAVEAAQASGTFAFSQNTAKKLQKAQQEGHRVVVLFSVASASKFVGAAALMD
SGALDWLSGQHAPYHMLRHIANSLTGGSRVAGARDGTELCGAAGRAMLAALTSRRRHPHA
QHTHGQHSQHAQHTHGQHSQHAHPHQPRPIQKHSGDL
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaaagaagggtaagcgtaatttaggtaataagcattttccaatagccgagtct
gtaagtatagctttgaagatacagttggataagtttttaaatgacgaaaatgaaacagaa
cttcagtttcctacgtttctatcggcccaagaacgaggattcattcacgagactgtcgcc
aagttggggttgaagtctaaatcgcgcgggaaaggtgtgaatcggtatttaactatatac
aagcgagtgggatcaactattatacaaaatgatgcaaagctcatacttgattcaaacatg
cgatgtgttatcaaagaagtcttcaatgcatttccaatcacggccaaagaaaaggaagat
ttgtctttatctcctgaaaaagaacgggctcctcagctaatccataaaacactggggcag
ttaaataatggtgtggcacagataccaaatacaacatataatccagatttactgaagttt
agggagaagctaccagtttatgagcaaagacaagatttactcaatgcaattctacataat
caggtaataattgtggcgggtgcaacaggttgcggcaagactacacagctcccgcaactg
gtgctagactattgccaagagcacaagcagccagccaggatatattgcacccagcctaga
agaatttctgcagtctcagtcgccgagagggtggcttatgagagaatggagaaaataggc
cagtctattggctaccagataaggttggagtcgcgtgtgagtcctcggactgtacttaca
tactgtacgaatggtgtactgttgaggactctcatgggtggtgatactgctctcactggt
gtgacgcatgtgttggtggatgaggtgcacgagcgtgacaagttcagcgacttcctactg
gtggctctgcgagacgcgctcggacggctcaaagacctcaagctggtgctcatgtctgcc
accatggacacgcagatattttccagatatttcaataattgccctgtgataactatcccc
ggtcgccttcacgaagtccagcgttactaccttgaggatatcctgaagatgaccaagtac
accaccaagaagatggttcaggttgaaagagaactgaaagctaaactcaaaagcggccag
agttactggtcacaccttgaaggacaaaaacagaatacggaggagatcaacaaggacgaa
aaggagactattgacccagctctccaggcagacatggacgaattcctggacgagtgtttc
aacgaaggcagcctggactcgttcagccagctgctgtacatgttcgtgtcggagggcgtg
ccggcgtcgctggcgcactcgcgctgcgggcgcggcgcgctggcgggcgcggcgctgcgc
ggcctgcgcgacgtggccgagcagctgctgcgcatcggcgccgatccgacactaaaggat
aagagcggtaagacgccgtacgaccacgcggtcgaaaacggccacacggagtgcgccaag
ctgctggcgaccttcgaccgctcggaggaggccaagagcggccaggaagaggacacctcg
gccgacgacttccttctggacgtttacaaccacgccttctccgaggagctgatcgaccac
gacctgatgctggcactggtcaggcacatacacatgaacatgcccaagggcagcattttg
atattcctgccgggatacgacgacatcgtcgccctcagggatttaatccagggctgcacg
gaaatgaacgttatgaagtaccagattttcacattgcacagcaatatgcaaactttggac
cagaagaaggtgttcaatcctttgccgaatgcgaggaagattattatatcgaccaatatc
gcggagacgtccatcacgatcgacgatgtcgtgtacgtcatagactcgtgcaaggtgaag
gaaaagtactacgagtccaatggtggggtctgttcgctgcagtgcgtgtggacctcgagg
gcctgttgccagcagagagcgggccgcgccggcaggaccaagcccggccactgcttccac
atgtgctccaagcggagattcaaaactctacccctcaattccgtgccagagatactcaga
gttcctctacaagaattgtgcctccacactaaattattagccccgggcaacacgccgata
gccgatttcttagccaaagccctagaaccgccctcatttttggccgtccgcaatgccgtc
actttactgaaaacgatcggagcattgacctctatggaagatttaacggagattggtcag
catttgctcgatctcacagtcgaaccaaagctgggcaagatgctgctctacgcgtgtgtc
atgaaatgcctcgacccgatcttgacaatcgtatgtagcttagccaacaaggaaccgttc
cagatatcgatgaatcccgaaaacaggaaaaagggtggattggccaggaaagaatttgcc
gccgactgcttctctgaccatatggcgttgctcagggcattccaagcctggcaggccgct
agagccaatggcacggagaaggctttctgcgcgaagtatttgatttgcggtgcaactatg
gaaatgattgtgggcttccgatcccaattattggcccaacttagggctctatgcctcgtt
aaagccagaggctccggggacataaaagatgtaaatataaattctgagaagtggcacgtt
gttaaagccgtcttggtgagtggcctctacccctccatagcgagggtagatcgggactcg
agtacgttgaggacttctaaagaagtaaaagtagcctttcatccaagttctaccctacac
cggggaggtggtgtcactggatcgcaaaagtcggttcaaaacctgccgactgattgggtt
gtttttgaggaaatatcgcgtgttgggcggttttgctttattcgctgtaatactctggta
actccactaacagttgctctattcggaggaccattgagactcaagagcggggcgttcact
cagagggcaaaccctccaggtctatcgagcgattccgatagtgaagcagacgagaacaac
tcctcgccggacacggcagtattgaccctcgacgactggatggcgttcacggccgacgcg
tccgacgccatcagcgtgtactacctgaggcaaaagctcagcgcactggtactccgtcgc
atgtcgaatcccgccaaacccatgagtccgctggatgagcaaattttaagcacagtggtg
cacgtcatcggcgctgaagagaaaaacataggattgattcaaccgagcggcatcgggcag
aggccgaaacctttgacgctagattcacccaattggcggatgcgcgtcgacgaggagcag
taccggcacgagaacaagtactatccacagtacggtcaaaacgactacggaaacaactac
taccagaacaactacgggtaccggaacggccaaaggccgggctggaggagcgacggcatg
ccgcaggggttctcgccgcagtcgtacagcgggccgaagagccccatgtcgcccaacggg
aagcttctgttggcgaatatcgagaagtacgcggaggccagcgacggcagcgtgcgctac
ttcgtggccaaggccgacgacgtgcacgccgtggaggctgcgcaggccagcggcaccttc
gccttctcgcagaacaccgccaagaagctgcagaaggcgcaacaggagggtcaccgagtg
gtggtgctgttctcagtggccagcgcctccaagttcgtgggcgcggccgcgctcatggac
tccggcgcgctggactggctcagcgggcagcacgctccgtaccacatgctgcgacacata
gcgaactccctgacgggcggcagtcgcgtggcgggcgcgcgagacggcacggagctgtgc
ggcgcggcggggcgggcgatgctcgcagcgctcacttcccgcaggcgacacccgcacgca
cagcacacacatggccagcactcgcagcacgcacagcacacacatggtcagcactcgcag
catgcccacccccaccaaccaagacccattcagaagcactccggtgacctatag
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