Vanessa cardui (painted lady): 124535101
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Entry
124535101 CDS
T09161
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
vcd
Vanessa cardui (painted lady)
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124535101
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124535101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
124535101
NCBI-ProteinID:
XP_046967123
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All DBs
Position
14:complement(12686261..12693650)
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AA seq
822 aa
AA seq
DB search
MSKIFSINNIPEFSQKERIVVVGVIGKSPYRYPNKTTPLIPTVQCEENGIECHWDERKGI
LYLHAVTYMDTKRLTSLADKLDENSYSTVKDADAADWLVASGELAIESCKALALIFHLCH
IVVLSSPTAVFDLGYLQLFKAIDAYRAELATQTAEELQSSEAGGAWETHGRPCCPRLLFH
FRRAPTPLRKAPAALKRLEHAVEDQIYFILRKARIITNVCAKSLFAIPKNEEFVHISAES
DRDSARDVSSLIRGLVQLCAGTESEGPPQRSSFRQFLQGHLDLAFGEGFDDNVGKYAMST
SFFELPSAASWRAAARALAPLYLSAADGDEPGALFDALATDVRFSQARCAKVLPIAQASY
AEGLPPHYSSQHHAHKVGVALGVVEAMARGPLAGAARARLRAACGAVWRARRLCEAPSLT
GHPCIHPQHDGAKEHSSGVRYVSACNCGRSKCSREDPYTVRKANYTFYAHAADECGVCNT
LQAIDFPVFQPSTPSFRAASVKGVPEEAAEYSEGREGAEEAALTSPQSARGSWSAPDELS
PGSERDDDDDESPACADGLHVVTVHGDSAPEKAISRQPSTTEYLPGMLHSGSPAALLPAF
PSWALVCLGASSLYSHNAGLPEHLQPGFLPHTNYLLPWDCAVRLDAWRPPRPRRPPHAHP
HAHPQQHTSPPLTVKIFIGFEYECARGHRFMMSSPDTVVNGGGGAWGREASQAGARLANS
TMPLYASCLCRAHVLAQLTRLHVVTPKAPVHVTLDPKVQPVAGGPVFVPQAAGEAALRLS
ASAYWVLRFPYVYADERGAAPRPRSPADAPGFLLTPLFGLQE
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaatattttccattaataatattcctgagttttctcaaaaggaacgtattgta
gttgtcggtgtcattggaaaatcaccttaccgttatcctaataaaactacccctctaata
ccaactgtacaatgtgaagaaaatggtatagaatgccactgggatgaaagaaaaggcatt
ctatatcttcatgcagtcacatatatggacactaagcgactcacgtcattagctgataaa
ctagatgagaattcatatagtacagtaaaagatgcagatgcagccgactggttggttgct
tctggagagttggcgattgagtcatgcaaagcgttagcactgatattccatctctgtcac
atagtggtgttgtcatcaccaacagcagtgtttgaccttggttatctacagttgtttaag
gccatagatgcttatagagcggaactagctactcaaacagcagaagaattacaatcatca
gaagcaggtggtgcttgggaaacacacggtcgaccttgctgccctcggcttctcttccac
tttcgccgtgctcctactcctttaaggaaagcaccagctgctctaaagagactagaacat
gccgtcgaggaccagatttatttcattttgcgaaaagcaaggatcataactaatgtttgc
gctaaatcattattcgcgatccctaagaatgaagaattcgtacacataagtgccgagagc
gatagggactccgcccgtgacgtcagctctctcatacgcgggctggtccaattatgcgcg
ggtacggagtccgagggaccgccgcaaaggagctccttcaggcaattcctgcaaggccac
ttggacttggctttcggtgagggcttcgatgataacgtcggcaagtatgccatgagcacg
tcattctttgagctgccgagcgcggcgtcgtggcgcgcggcggcgcgtgcgctggcgccg
ctgtacctgagcgcggcggacggcgacgagcccggcgcgctgttcgacgcgctcgccacc
gacgtccgcttctcgcaggcgaggtgtgctaaggtgctgcctatcgcacaagcgtcgtat
gccgagggcctcccacctcactactccagtcaacatcacgcgcacaaggtgggcgtggcg
ctgggcgtggtggaggcgatggcgcgcgggccgctggcgggcgcggcgcgggcgcggctg
cgcgcggcgtgcggcgccgtgtggcgcgcgcgccgcctgtgcgaggcgccctcgctcacc
gggcacccctgcatacacccgcagcacgacggcgcgaaggagcactcgtcgggcgtgcgc
tacgtgagcgcgtgcaactgcgggcgcagcaagtgctcgcgcgaggacccctacaccgtc
aggaaggccaactacacgttctacgcgcacgccgccgacgagtgcggcgtctgcaacacg
ctgcaggccatcgacttccccgtcttccagccctccacgccgagcttcagggccgcctcc
gtcaagggggtgccggaggaggcagcggagtactcggagggcagggagggcgcggaggag
gcggcgctgacgtcgccgcagtcggcgcgcggctcgtggtcggcgcccgacgagctgtcg
ccgggctccgagcgcgacgacgacgacgacgagtcgcccgcctgcgccgacgggctgcac
gtcgtcaccgtgcacggcgacagcgcgcccgaaaaagcgataagccggcagccgtcgacg
acggagtacctgccgggcatgctgcactcgggcagcccggcggcgctgctgcccgccttc
cccagctgggcgctcgtgtgcctgggcgcgtcctcgctgtactcgcacaacgccggcctg
cccgagcacctgcagcccggcttcctgccgcacaccaactacctgctgccctgggactgc
gccgtgcgcctcgacgcctggcgcccgccgcgcccgcgccgcccgccgcacgcgcacccg
cacgcgcacccgcagcagcacacgtcgccgccgctcactgtcaagatcttcatcggcttc
gagtacgagtgcgccaggggacacagattcatgatgtcgtcgccggacacggtggtgaac
ggcgggggcggggcgtggggccgcgaggcgagccaggcgggcgcccggctggccaacagc
accatgccgctgtacgcctcctgcctgtgccgcgcgcacgtgctggcgcagctcacgagg
ctgcacgtcgtcacgcccaaggcgcccgtgcacgtcacgctggaccccaaggtgcagccg
gtggcgggcgggccggtgttcgtgccgcaggcggcgggcgaggcggcgctgcggctgagc
gcgtcggcgtactgggtgctgcgcttcccgtacgtgtacgcggacgagcgcggggcggcg
ccgcggccgcgctcgccggccgacgcgcccgggttcctgctcacgccgctgttcggcctg
caggagtaa
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