Vanessa cardui (painted lady): 124535544
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Entry
124535544 CDS
T09161
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03008
Ribosome biogenesis in eukaryotes
vcd03013
Nucleocytoplasmic transport
vcd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124535544
03015 mRNA surveillance pathway
124535544
03008 Ribosome biogenesis in eukaryotes
124535544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124535544
03009 Ribosome biogenesis [BR:
vcd03009
]
124535544
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124535544
mRNA cycle factors
Stress granule specific factors
124535544
Ribosome biogenesis [BR:
vcd03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
124535544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
TAP_C
Tap-RNA_bind
NTF2
LRR_4
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
124535544
NCBI-ProteinID:
XP_046967724
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All DBs
Position
15:complement(10098818..10106637)
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AA seq
605 aa
AA seq
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MPKRGGRIRNWKPNEHFEHDDRIQSNNTRRVSFKPGTNKGKNKFNSWNNASHLLLDGDID
MGATAGQGPNRKGFRGRGRLSSPAPRPASKKKFLPGLLPWYQIIIPYGAKHDKDVVLRSL
LGFISPEVFIPHYYKINGNAAVFYVDDVKIAEKLFYADRKIAMSDGFKLVVIVRNSVPNV
NVDAGMKEKMKLAMAKRYNPATKALDLTKFHSDPDLSDIFCALFRPVIMLAAIEIMAENI
PDLEALNLNDNKLHGIEHMKILSTKLKNLKILYLGDNRIPYLGSMDPLKPLQLVELYLKG
NPLVNRFNDHDIYVSDVRKKFPKLVRLDGVDLPPAIGFDVSEDVTLPPCQQSFLIDPAGQ
DLVREFLTQYFAIFDSESRQPLLEAYHETATMSMAANYLSNDNRNAPTNRLNAYISNSRN
LIRITERESRRRYLRTGRLQVVSFLSDLPKTKHDLMSFAVDLLVFTPAMIVLTMNGVYKE
TTVAGNPSRSFHRTFVIVPNSAGGFSITNDMLFVSNTTREQEDASSSSPAGVAAPAPVSA
PAPAPAPAHDETQRAILATLSQQTGMNEHWSINCLQETGWDYQRALFIFNQLQSEGKIPP
EAFVK
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaacgtggaggaagaattagaaattggaaacctaatgaacactttgaacacgat
gaccgtattcaaagtaataacacaaggcgagttagttttaaacctggaactaacaaaggt
aaaaacaaattcaactcatggaataatgcatcgcatcttttgttggatggtgacattgac
atgggagcaactgccggccagggtccaaacagaaagggttttcgtggcagagggagacta
agctcgcctgcaccgagaccagcctcaaaaaaaaagtttctacctggtctgttaccttgg
tatcaaataataataccatatggagcaaaacatgataaagatgtagttctacgatcactg
ctgggctttatctcaccggaagtattcattccacattactacaaaataaatggaaatgca
gctgtgttctatgttgatgatgtcaaaatagcagagaaactgttctatgcagatcgaaaa
atagctatgtcggatggattcaagcttgtcgtaattgtgaggaattctgtaccgaatgtc
aatgttgatgccggtatgaaggagaaaatgaagcttgctatggcaaaaagatataatccc
gcaaccaaagctttagacttgacgaaattccactctgatccagatttaagtgatatattc
tgtgcgctgttccgtccagtaatcatgttggcagcaattgagatcatggcagaaaatatt
cccgatttagaagctttaaacttaaatgacaacaagcttcatggaattgaacacatgaag
attttgtccacaaaattaaagaatcttaaaattttgtacctgggtgacaacaggatacca
tacctaggttccatggaccccttgaagccgcttcagcttgtggagttgtaccttaaagga
aatcctctggtgaacaggttcaatgaccatgatatttatgtcagcgacgtccggaagaaa
tttccaaaactggtgagattggacggcgtggatcttcctccagcgatcggcttcgacgta
tcagaagatgtgactcttcctccgtgtcagcaatcgttccttatcgaccctgctggccag
gacctggtcagagagttcctaacacagtattttgctatatttgactcagagtcaaggcaa
ccgttactggaagcttaccatgagactgctacaatgtccatggcagcaaactatctcagc
aatgataacagaaatgcacccactaatagattgaacgcatacatatcaaacagccgaaat
ttaataagaataacagagagagaatcaagaagaagatatttacggacgggtagattgcaa
gttgtttcattcctctcagatctgcccaaaacaaaacatgatttaatgagttttgctgtg
gatttacttgttttcacgccagcaatgatagttctaacaatgaatggagtgtacaaagag
acaactgtagccggcaacccttcacggtccttccaccggacatttgtcatagtacccaac
agtgctggaggtttctctatcacaaatgatatgctcttcgtctctaacactacaagggaa
caggaggatgcatcgagttcctcaccggcgggtgtggccgcgcccgcccccgtctccgcg
cccgctcccgcccccgctcccgctcatgacgaaacgcagcgcgctattctggccactctg
agccagcaaacgggcatgaacgagcactggagcatcaattgtttacaagaaactggttgg
gactatcagcgagcattgttcatctttaaccaactacaatcagagggcaagataccacct
gaggcttttgtgaagtga
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