Vanessa cardui (painted lady): 124536021
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Entry
124536021 CDS
T09161
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03430
Mismatch repair
vcd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124536021
03460 Fanconi anemia pathway
124536021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcd03400
]
124536021
DNA repair and recombination proteins [BR:
vcd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
124536021
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
ExsD
Motif
Other DBs
NCBI-GeneID:
124536021
NCBI-ProteinID:
XP_046968358
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Position
16:complement(5508996..5513464)
Genome browser
AA seq
846 aa
AA seq
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MKIMEDVNDLSGVQVNGIKPINKDTVHKICSGQVVLSLAVAVKELVENSLDAGATNIDIR
LKKYGIDLIEVTDNGSGVTEDNFSALTLKYHTSKLNDYSDLLGVSSFGFRGEALSSLCAL
ADLTITTKHKSSQFATKIQYDHKGNIINKTPCSRQIGTTVSLSNLFCSLPVRKKEFHKNA
KREFNKMTNLLYAYCLISVGVKITCTNHVSASNKSTVVATQGSLSYKDNIACVFGIKQLQ
NIFEIKSEYASNIKDNIFKGLSGEVKDNSESINIDDVEIDLSEDSNDAQNDETKISQEII
TSTQKTQGYKNLPDPVELVGYISSCAHGCGRSSTDRQYFFVNSRPCEPTKVIKLVNEIYR
QYNPNQYPFIFLNINVERISVDVNVTPDKRKVFLTKEKFILDVLKASLAKLFENVPRTLK
LETTSLLSQKLEPELKQPRIFNSFLKQFSNQSEFSMDNKDESFGKSELKRKASSNLDNFI
SIKKSYNPNEEDILESEVSNDIQSKSVPINKLSELENANVTAATTIIVSEEDKIERDNLS
TDHNSSPDLIKNSSYSVCEESHTIYCKTNHSEIKTPKSKIQKVVTDKDDLGKHARKTVIL
KTSLDHITKLANLCDSNLAKSNPDRIKFKSAINPVFNKKCEEELSKEISKESFKNMSIVG
QFNLGFIITKLDDDLFIIDQHATDEIYNFETLQKTTELTSQKLVIPQQLELTGVNEQILM
DNVGVFKKNGFTFKIDEDAPPTKRVKLLTIPMSKNWIFGKDDIEELLFMLKENQSEYCRP
SRVRAMFASRACRKSVMIGTALGKSDMRQLVDHMAEIDKPWNCPHGRPTIRHLVNLAMVQ
TNNDRI
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattatggaagatgtaaatgatttatctggagttcaagttaatggtattaaacct
attaacaaagacacagtgcacaaaatatgttccggccaggtggtgcttagtttagcagta
gcagttaaagaattagttgaaaattctctagatgctggtgcaacaaatattgatataaga
ttaaaaaaatatggtattgacttaattgaagttacggataatggatcaggggtaacagaa
gataatttttcagctctaacattaaagtaccatacctcaaagctaaatgattactccgat
ttgctaggagtatcaagttttggttttagaggagaagcattaagttctttatgtgcattg
gccgaccttacaatcactactaagcataaaagctctcaatttgctactaaaatacagtat
gaccataaaggaaatataatcaataagacaccatgttcccggcaaattggaacaactgtc
tctttgtcaaatcttttttgttctctgccagtaaggaaaaaagaattccacaagaatgct
aaaagagagttcaataaaatgacaaatttactgtatgcatattgtttaatatcagtagga
gttaagataacttgcaccaaccatgttagtgcttcaaataaatcaacagttgtagcaact
caaggatctttatcttacaaggataatattgcttgtgtttttggcataaaacaattacaa
aatatatttgaaataaaatcagagtatgcatccaatattaaagataatatttttaagggt
ttatctggagaggtaaaagataacagtgaaagtataaatatagatgatgtagaaatagat
ttatctgaagattcaaatgatgcacaaaatgatgaaactaaaatttcacaagaaatcata
acaagtacacagaagacacaaggttataagaacttacctgaccctgtagagcttgtagga
tatatctcttcttgtgcccatggttgtggtcgatcaagcacagatagacaatattttttt
gttaattcaagaccttgtgaacctaccaaagttataaaactggtaaatgaaatttataga
cagtataaccccaatcaatatccttttatttttcttaatattaatgtggaaagaatatca
gtagatgtaaatgtcactccagataagagaaaagtttttttaacaaaggagaagtttatt
ttagatgttctgaaagcttcattagcaaaactgtttgagaatgtacctcgaacattgaaa
cttgaaacaacatccttacttagtcaaaaacttgaacctgaacttaaacaacctagaatt
ttcaactcattcttaaaacaatttagtaatcaatctgaattctctatggataataaagat
gaatcatttggaaaatcagaattaaagagaaaagcttcatcgaatttagataactttata
agtataaaaaaaagttataatcccaatgaagaagatatactagaaagtgaagtatctaat
gacattcaatcaaagtctgtacccataaacaaattatctgaactagaaaatgccaatgtg
actgctgcaacaactataatagtttcagaagaagataaaattgaaagagacaatttatcc
acagaccataatagttctcctgatttaattaaaaacagttcctatagtgtttgtgaagaa
tcacacactatatattgcaaaacaaatcattcagaaataaaaacaccaaaatcgaaaata
caaaaagtagtaactgataaagatgacctaggcaaacatgcaagaaaaactgtaattttg
aaaacttccctagaccatattacaaaattagcaaatttgtgtgacagtaatttggctaaa
tctaatcctgataggataaaatttaaatcagccattaatcccgttttcaacaagaaatgt
gaagaagaattaagtaaggaaatatcaaaagaatcatttaaaaatatgtcaattgtaggt
cagttcaatttaggctttattataaccaagttggatgatgatctgtttattatagaccaa
catgcaactgatgaaatttataatttcgaaacattacaaaaaacgacagaattaacaagc
cagaaactcgttattccacaacaactggagctaacaggtgtcaatgaacaaatattaatg
gataatgtgggtgttttcaaaaagaatggctttacatttaaaatagatgaagatgctcct
cctaccaaacgagtaaaacttttaactattccaatgtcaaaaaattggatatttggtaag
gatgatattgaagagcttctgtttatgttaaaagaaaaccaatctgaatactgtaggcca
agtcgggtaagagctatgtttgcatctagagcttgtagaaaatctgtcatgattgggaca
gctttaggtaaatctgacatgcgtcaactagttgatcatatggcggaaattgataaaccc
tggaattgtcctcatggtagaccaacaattcgtcatcttgttaacctagcaatggttcaa
accaataatgacagaatctaa
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