Vanessa cardui (painted lady): 124536343
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Entry
124536343 CDS
T09161
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124536343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcd03021
]
124536343
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124536343
Transcription machinery [BR:
vcd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124536343
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124536343
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCHC
zf-CCCH_4
zf-CCCH_3
zf-CCCH_2
zf-CCCH_RBM22
zf-CCHC_2
Nab2-like_zf-CCCH_
zf-CCCH_DUS3L
Motif
Other DBs
NCBI-GeneID:
124536343
NCBI-ProteinID:
XP_046968828
LinkDB
All DBs
Position
16:complement(12950899..12953637)
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AA seq
289 aa
AA seq
DB search
MEVIVANVDHIKFDIDYALEQQYGALPLPFPGMDKSTAAVCEFFSQPGGCNNGPQCPYRH
VRGDRTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYARFNACHNKECPFLHIDPES
KIKDCPWYDRGFCRHGPHCRHRHVRRVLCINYLAGFCPDGPNCKYMHPRFELPAPPEQTK
DQKRLPICHYCSEVGHKASSCNKIPPDQREVAQKQEEARYRALGYVKPANDNDEMQRLQR
MMHKPLEEVTCFKCGTKGHYANKCPKGHLAFLSNQTGQNNSNNMFKKPN
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatagtcgcaaacgtagatcatataaaatttgatatagattacgcattagaa
caacagtatggagcgttgccgcttccctttcctgggatggataaatcaacagcagctgtt
tgcgaattctttagtcaacctggtgggtgtaacaatggacctcagtgcccctatagacat
gtcagaggcgatcgaacagttgtttgtaaacattggcttcgtggcttgtgcaaaaaagga
gaccagtgtgaatttctacatgaatatgacatgaccaaaatgcctgaatgctatttctat
gcaaggtttaatgcttgccacaataaagagtgtcccttcctacacatagatcccgaaagt
aaaattaaagactgtccttggtatgatcgaggattttgtcggcacggcccccactgtcga
cacagacatgttagaagagtgttgtgcataaactatttagctggtttctgccctgatgga
ccaaactgcaagtacatgcacccaaggtttgaactgcctgccccaccagaacaaactaag
gatcaaaagcgtctgccaatttgtcattactgctcagaagttggtcataaagcttcatca
tgcaacaagatacctccagatcaaagagaagttgctcaaaaacaagaagaagcaagatat
agagcactaggctatgtaaaacctgcaaatgataatgatgaaatgcaacgacttcaaaga
atgatgcataaacctctagaagaagtaacttgtttcaaatgtggcaccaaaggccattat
gcaaataaatgtcccaagggccacctcgctttcttgtcaaatcaaacaggacagaacaat
tctaacaatatgttcaaaaaacctaactag
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