Vanessa cardui (painted lady): 124536375
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Entry
124536375 CDS
T09161
Name
(RefSeq) probable ATP-dependent RNA helicase ddx42
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124536375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcd03041
]
124536375
03009 Ribosome biogenesis [BR:
vcd03009
]
124536375
Enzymes [BR:
vcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124536375
Spliceosome [BR:
vcd03041
]
Complex A
U1 snRNP components
U1 related factors
124536375
Complex B
124536375
Ribosome biogenesis [BR:
vcd03009
]
Eukaryotic type
Pre-60S particles
Helicases
124536375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
ERCC3_RAD25_C
Nup160
Motif
Other DBs
NCBI-GeneID:
124536375
NCBI-ProteinID:
XP_046968861
EnsemblRapid:
ENSVCAG00000014240
LinkDB
All DBs
Position
16:complement(6541201..6550522)
Genome browser
AA seq
1063 aa
AA seq
DB search
MSSNWNNSRGENGGSKFGGNKFGSNNTSRFGNGGSKFGGGGGKFGGGGGGYGGGKKEFSG
GQNMRRPNWDSLSLQPFNKDFYNPPPSVLNRSPYEVEEYRNEHEVTVSGAEVPNPIQHFE
EGNFPDYVMSSIKGMGYKDPTPIQAQGWPIAMSGKNLVGIAQTGSGKTLAYILPAIVHIN
NQPPVRRGDGPIALVLAPTRELAQQIQQVATDFGNAAYVRNTCIFGGAPKREQARDLERG
VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLM
WSATWPKEVRKLAEDYLGDYVQINVGSMQLSANHNILQIVDVCQEHEKENKLNVLLQEIG
QNQDPGAKTIIFVETKRKVENITRNIRRYGWPAVCMHGDKTQQERDDVLYQFKQGRASIL
VATDVAARGLDVDGIKFVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKD
LVSVLQEANQIISPQLQTMADRCGGGGGGWNRNRFGGGRGGGGSFKRGSNFGRGNGHGSS
GHKRFNEYIMALNVLKSFLIRNDFVKVFLKDGKKVLQSRAYSIGISTNCKDKPNYIVLRN
NVARDWQLTRFSVRNQLYSTQTAQQSDSEYCSENNITVIGDDIPSPIRDIDTSNLPDYIK
NFLKEQDFTKPTVIQSQGWPIAISGKNFVGIAQTGTGKTLAYLLPAVIQLKENKGRKGRG
PRVLVLAPTRELARQIEEVAKDFQKLLNIRCLCIYGGVSRTGQAEQLKAGVDILIATPGR
LNDFINSKVTNLSRCTYVVLDEADRMLDMGFEPQIREALEEVPYDRQILMFSATWPKEVQ
YLAKDYLGEFVQVNVGSTELSANHNIQQHIHVCEQEEKMSKFKSIMHDISGQGFGKLLVF
TNTKKFVDSLSLMLRRNGWPAAGIHGDKTQLQRDSVINKFRSGKTNILVATDVAARGLDV
EGVTHVINYDYPNTSEDYIHRIGRTGRLQNTGIAHTILTSENARQAKSLIAVLKEANQEV
PEVLHQLAKENVKTKYQHSRYTPNKYNSNTNRKWNKFRSNKMY
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcaactggaacaatagccgtggtgaaaacggtggttccaaatttggaggaaac
aaatttggtagcaacaacacatcgagatttgggaatggtggctccaaatttggaggtggt
ggagggaaatttggcggtggtggaggtggctacggtggtggcaagaaagaattttcgggc
ggtcagaacatgaggcgtccaaattgggattctttgtctctgcaaccattcaacaaagat
ttttacaatccacctccatcagttcttaatagatcaccatatgaagtagaagaatacaga
aatgaacatgaggttactgttagtggagctgaggttccaaaccctattcagcattttgaa
gagggaaatttccccgattatgtcatgtcatctatcaaagggatgggttacaaagatcca
acaccaatccaagcacagggctggccaattgctatgtcgggaaaaaatttggttggtatt
gcacaaactggatcgggtaaaacgttagcctatattttacctgccattgtgcacataaat
aaccagcctcctgtcagacgaggtgatggtcccattgctcttgtgctagcacccactaga
gaacttgcacaacagattcagcaagtagccactgactttggcaatgcagcctatgttcgt
aatacttgcatatttggaggtgctcctaaacgtgaacaagcgcgtgatttggaaagggga
gtggaaattgttattgccactcctggacggttaattgacttcttggaaaaaggcacaact
aatttacagcggtgcacatatttagttctggatgaagctgaccgtatgttggacatgggt
tttgaaccccaaataagaaaaataattgaacaaattcgcccagacagacaaactttaatg
tggtctgcaacatggcccaaagaagttagaaaattggcagaggattaccttggtgactat
gtacaaatcaatgttggttcaatgcagctgtctgctaaccataacatcctacaaattgta
gatgtttgccaagaacatgagaaagaaaacaaattaaatgtgttgcttcaagaaatagga
caaaaccaagatcctggagcaaaaactataatttttgttgaaaccaaaaggaaagtagaa
aatataacaagaaatattagacgatatggatggcctgctgtttgcatgcacggggacaaa
acacaacaagaaagagatgacgtcttatatcaattcaagcaaggacgtgctagtatacta
gttgcaactgatgttgcagccagaggattagatgtggatggaattaaatttgttataaac
ttcgactaccctaattcatcggaggactacattcaccgaattggcagaacgggacgatca
aaatcaaaaggaacatcatatgcctttttcacaccttcaaattctcgtcaagctaaggac
ctagtttctgtactccaagaggcaaatcagatcattagccctcaactgcaaactatggct
gaccgctgtggaggtggaggcggaggatggaatagaaatagatttggaggtggccgtgga
ggcggtggctcatttaaaagaggatcaaacttcggcaggggcaatggacatggcagcagt
ggtcataaaagatttaatgaatatatcatggctcttaatgttttaaaaagttttttaata
cgcaatgatttcgtcaaagtattcctcaaagatggtaaaaaggttttgcaaagcagagca
tattcaattggaataagcactaactgtaaagataaaccaaattatatagttttacgaaac
aatgtagcaagagactggcagttaactaggttttcagtaagaaatcaattgtattctaca
caaacagcacaacaaagtgatagtgaatattgtagtgaaaataatattactgttatcgga
gacgacatacctagcccaataagagacatagacacaagcaatcttccagattatataaaa
aattttttgaaagagcaggactttacaaagccaacagtaattcaatctcagggatggcct
attgcaatatctggtaaaaattttgttggtattgctcagacaggtactgggaaaacattg
gcatatttattgcctgcagtaattcagttaaaagaaaataaagggcgaaaaggaagagga
ccaagggtgctagttttagcgcctacaagagaattagcaaggcagattgaagaagttgct
aaggattttcaaaaattgttaaatatacggtgcttatgtatatatggtggtgtcagtaga
acaggtcaagctgaacagttaaaggcaggagttgatatattgatagccacacctggtaga
ttaaatgattttattaatagtaaagtcacaaacttgagtcgctgtacctatgttgtgttg
gatgaagctgacagaatgttggatatgggctttgaacctcagatccgtgaggctttggaa
gaagtaccatatgacagacaaattttaatgttttccgctacatggccaaaggaagtacag
tatttggcaaaggattatttaggagagtttgttcaggtcaatgttggttccacagaattg
tcagcaaatcacaacattcaacaacatatccatgtatgtgagcaagaagaaaagatgagc
aagtttaaatcaattatgcatgatatatccggacaaggctttgggaaactgctagtgttt
accaatacaaagaaatttgttgacagtttgtctcttatgttaagaaggaatggttggcca
gctgcaggtatacatggtgataagacacagttgcaaagggatagtgttattaacaaattt
agaagtggtaaaacgaatatacttgttgctactgatgtggcagctagaggattagatgtg
gagggggtaacacatgtgatcaattatgattacccgaatacttcagaagattatatacat
aggattggacgaactggtcgcttacagaatactggtattgctcacacaatccttaccagt
gaaaatgcaagacaggctaaaagtttaattgcggttttgaaagaagcaaatcaggaagtt
ccagaggtcttacatcagttagccaaagaaaatgtgaaaaccaaatatcagcactccaga
tacactccaaacaagtacaactcaaataccaatagaaaatggaataaatttcgtagcaat
aaaatgtattag
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