Vanessa cardui (painted lady): 124536437
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Entry
124536437 CDS
T09161
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03022
Basal transcription factors
vcd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124536437
09124 Replication and repair
03420 Nucleotide excision repair
124536437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcd03021
]
124536437
03400 DNA repair and recombination proteins [BR:
vcd03400
]
124536437
Enzymes [BR:
vcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124536437
Transcription machinery [BR:
vcd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124536437
DNA repair and recombination proteins [BR:
vcd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124536437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
Motif
Other DBs
NCBI-GeneID:
124536437
NCBI-ProteinID:
XP_046968933
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All DBs
Position
16:7964092..7971487
Genome browser
AA seq
780 aa
AA seq
DB search
MGPPKKIKKYDSKSGSDRSGKKKKVEEDVTIDLVDDDNPENAGVPGAAMQDAEKNDQVPE
DEFGAKDYRSQMELKPDNASRPLWVAPNGHIFLEAFSPVYKHAHDFLIAIAEPVSRPQHI
HEYKLTAYSLYAAVSVGLQTNDIVEYLQRLSKCTVPAGIIEFIQLCTLSYGKVKLVLKHN
RYLVESKHVDVLQKLLRDPVVQQCRLRRDGEHELLPAAPAPAAPLALPAKPGEEKPAANG
AVPEDISQFYQQLDKDDDDDENTDITAKNTAVAFEVDPDKIEVIQKRCIELEYPLLAEYD
FRNDTVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAVCT
VRKRALVLCNSGVSVEQWKQQFKCWSTADDSMICRFTSEAKDKPMGAGILITTYSMITHG
QRRSWEAEQTMKWLQAQEWGLVVLDEVHTIPAKMFRRVLTIVHSHAKLGLTATLLREDDK
IADLNFLIGPKLYEANWLELQTNGYIARVQCAEVWCPMTPEFYREYLVQKINKKMLLYVM
NPSKFRACQFLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNF
KFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYN
AFFYTLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDLFYGTREEQGMLLQQ
VLAASETDCEEEREGAAGGGGARRAGGSLASLAGADDALYLEHRRSGQHNKHPLFKKFRY
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgggacccccaaaaaaaattaaaaagtatgattctaaaagtggaagtgacagatcaggc
aagaaaaagaaagttgaagaagatgttactatagatcttgtagatgatgataatcccgaa
aatgctggagtgccaggtgcagctatgcaagatgcagagaaaaacgatcaagttccagaa
gatgaatttggtgctaaagattacaggagccaaatggaactcaaaccggacaatgcaagt
cgcccgctatgggttgcaccaaacggccacatatttcttgaagcattttcacctgtttat
aaacatgctcatgatttcctcatagctattgcggaacctgtctctagacctcaacatatc
catgagtacaaattaacggcatacagtttatacgcagccgtatcggtggggctgcaaact
aatgacatcgtagaatacttgcagaggctcagcaaatgcaccgtgcctgctggtatcata
gagtttattcaactctgtaccctgtcatatggcaaagtgaagcttgttctaaaacacaat
agatacctggtggagagcaagcacgtggacgtgctgcagaagctgctgcgcgaccccgtg
gtgcagcagtgccgcctgcgccgcgacggcgagcacgagctgctgcccgccgcgcccgcg
cccgccgcgccgctcgcgctgcccgccaagcccggtgaagaaaagccggcggccaacgga
gctgttccagaagatatcagccagttctatcagcagttggacaaggacgacgacgacgac
gagaacaccgacattacggccaaaaataccgccgtagctttcgaagtggaccccgataag
atcgaagttatacaaaaacgatgcatcgaactggagtacccgctgctagccgaatacgat
ttccgcaacgatacggtcaaccccgatataaatattgacttgaaaccgacggccgtactt
cggccgtaccaggagaagagtcttcggaaaatgttcggaaacggacgggcgaggtcgggc
gtgatcgtgctgccgtgcggcgccggcaagtcgctggtgggcgtgacggccgtgtgcacg
gtgcgcaagcgcgcgctcgtgctgtgcaactcgggcgtgtccgtggagcagtggaagcag
cagttcaagtgctggtccacggccgacgacagcatgatctgccgattcacgtcggaggcg
aaggacaagccgatgggcgccggcatcctcatcacgacgtactctatgatcacgcatgga
cagcggcgctcgtgggaggcagagcagactatgaagtggctgcaggcgcaggagtggggg
ctggtggtactggacgaggtgcacaccatccccgcgaagatgttccgacgggtgctcact
atcgtgcactcgcacgccaagctgggtctgacggcgacgttgctgcgagaggacgacaag
atcgccgacctgaacttcctgatcgggccgaagctgtacgaggccaactggctggagctg
cagaccaacggctacatcgcgcgcgtgcagtgcgccgaggtgtggtgccccatgacgcca
gagttctaccgcgagtacctcgtgcagaagataaacaagaagatgctgctgtacgtgatg
aacccgtcgaagttccgcgcgtgccagttcctcgtccgctaccacgagcgacgcggcgac
aagaccatagtgttctcggacaacgtgttcgcgctgcgacactacgccgtcaaaatgaac
aagccgtacatttatgggcccacgtcgcagagtgagaggatacagatattgcagaatttc
aagttcaatcccaaagtgaatacgatcttcgtgagcaaagtcgccgataccagcttcgat
ttgccggaagcgaatgtcttgatacagatatcttcgcacggaggctcgagacgacaagag
gcgcagcgattaggtcgaattttgagagcgaaaaaaggagcactagcagaagagtacaat
gcatttttctacactttagtgtcacaggacactttggaaatggcgtacagtcgtaaaaga
caacggtttcttgttaatcaaggttacagttacaaggtgattacagaactgaaaggaatg
gatcaggaaccagacttattctacggcactagagaggagcaaggcatgttactacagcag
gtgctggcggcgtcggagacggactgcgaggaggagcgcgagggcgcggcgggcggcggc
ggcgcgcggcgcgcgggcggctcgctggcgtcgctggcgggcgccgacgacgcgctgtac
ctggagcaccgccgctccggccagcacaacaagcacccactcttcaagaagttccgatac
tga
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