Vanessa cardui (painted lady): 124536523
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Entry
124536523 CDS
T09161
Name
(RefSeq) ATP-dependent RNA helicase dbp2-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124536523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcd03041
]
124536523
03009 Ribosome biogenesis [BR:
vcd03009
]
124536523
Enzymes [BR:
vcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124536523
Spliceosome [BR:
vcd03041
]
Complex A
U1 snRNP components
U1 related factors
124536523
Complex B
124536523
Ribosome biogenesis [BR:
vcd03009
]
Eukaryotic type
Pre-60S particles
Helicases
124536523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UTP25
DUF5335
Motif
Other DBs
NCBI-GeneID:
124536523
NCBI-ProteinID:
XP_046969033
EnsemblRapid:
ENSVCAG00000013989
LinkDB
All DBs
Position
16:12497440..12511208
Genome browser
AA seq
661 aa
AA seq
DB search
MYDDRRGGRGGRGGSRGRGMSRGGVSSRGGRSSDRSQERVTRFSGGSRGRDMGRGGGRGG
SRGGRDSRDDFRGKFKNDQPGGGLRKIRWDNVQLTPFQKNFYVPHANVQRRSLADVEAYR
SQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGI
AQTGSGKTLAYILPAIVHIINQPRLLRDEGPIVLVLAPTRELAQQIQQVAQEFGQSVQVR
NTCIFGGAPKGPQGRTLERGVEIVIATPGRLIDFLEKDTTNLRRCTYLVLDEADRMLDMG
FEPQIRKIIEQIRPDRQVLMWSATWPKEVQNLAEEFLHDYIQINIGSLSLSANHNILQIV
DVCEEWEKNEKLLTLLTEISSEEETKTIIFAETKRKVDEITKTINRSGWRALAIHGDKNQ
QDRDYVLQQFRHARSSILVATDVAARGLDVEDVKFVINYDYPNNSEDYVHRIGRTGRSHN
TGTAYTLFTPNNSAKAKDLLSVLQEANQVVNPKLLELAQCGMGFKGKYGRGRFRERDDSS
SRGERGRGRGRGRYSGDRAGSRWDNNSNGQSGFQSSGGSGFNRDNYNSRPNFGSREGGSF
NRDREGGGSFRGRGGRGGRGRGGQYGSGYGQNQSGFNQSNQGFNSAPNSYYNMYSQPPPS
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgatagacgtggtggtcgtggtggaagaggaggatcgcgaggtcgcggtatg
agtcgaggcggcgttagttcccggggcgggaggtctagtgatagatcccaggagagggtg
actcgtttcagtggaggcagccgagggcgtgatatgggaaggggtggtggcagaggaggc
agccgaggtggacgcgatagtcgtgatgacttccgtgggaaattcaaaaatgaccaaccg
ggtggcggtctccgtaaaattcgctgggacaacgtccaactcactcccttccaaaagaac
ttctatgtgcctcatgcgaatgttcaaagacgatctctggctgatgtggaggcgtatcgc
agtcagcatcagataacggttaaagggcgtgacgtccctgcgcctagcatatttttcgaa
gaaggaggatttcctgactatgctatgaaagaaattctcaaacaaggatttcctaatccg
acaccaattcaagctcaaggttggccaattgccttatctggtcgagacatggtcggaatt
gctcaaacaggttcaggaaagacactagcttacattttgccggcaatcgtgcatataatc
aatcaaccaagactgctaagagatgaaggtccaatagttcttgtattggctccgactaga
gaattggcacagcagattcaacaggtggctcaagagtttggtcagagtgtacaagttcgt
aacacatgcatctttggaggggcacccaaaggaccccagggcaggactttggagaggggt
gttgagatagtcatcgctacaccaggaagactgattgatttcttggagaaagatacaaca
aatcttcgtcgctgcacatatttagtattggatgaagccgacagaatgttggatatgggc
tttgagcctcagattaggaagattattgaacagatcagacctgatagacaggtgctgatg
tggtctgcaacttggccgaaggaggttcagaatttggcggaagagttccttcatgactac
attcagatcaacattggttcgctatccttgtcagccaatcacaatatcctgcagattgtt
gacgtctgtgaggagtgggagaagaatgaaaaactcttgaccttactaacggagatatct
tcagaagaggaaactaagacaatcatctttgcagagactaagagaaaggtggacgagata
acgaagaccatcaaccgctcgggctggcgcgcgctggccatccacggcgacaagaaccag
caggaccgcgactacgtgctgcagcagttccgacacgcgcgctcctccatcctcgtcgcc
accgacgtcgccgcgcgcggcctcgacgtggaggacgtgaagttcgttataaactacgac
taccctaacaattcggaggactacgtgcatcgcatcggtcggacgggccgctcgcacaac
accggcacggcctatacgctgttcacgccgaataactccgctaaggcgaaagacctgctg
tcagtactgcaagaggccaaccaagtggtcaaccctaaattgctggagctagcgcaatgt
ggaatgggattcaagggaaaatatggtcgcgggcgcttccgcgagcgggacgacagcagc
tcgcgcggggagcgcgggcgggggcgcggccgcggacggtactcgggcgacagagcaggg
tcaaggtgggacaacaactctaacggccagagtggcttccagagttccggcggttctggt
ttcaacagagacaactacaacagccgtcccaatttcggtagcagggagggtggaagcttc
aatagagacagagagggcggtggtagcttcagaggtcgaggtggaagaggtgggagagga
agaggtggacaatatggttcaggttatggacaaaatcaatcagggttcaatcaatccaac
caaggtttcaattcagctccgaacagctactacaatatgtactcacaaccaccgccctcg
acctaa
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