Vanessa cardui (painted lady): 124536531
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Entry
124536531 CDS
T09161
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124536531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcd03021
]
124536531
03041 Spliceosome [BR:
vcd03041
]
124536531
03036 Chromosome and associated proteins [BR:
vcd03036
]
124536531
Transcription machinery [BR:
vcd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
124536531
Spliceosome [BR:
vcd03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124536531
Complex B
124536531
Complex C
U2 SnRNP specific factors
124536531
Chromosome and associated proteins [BR:
vcd03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
124536531
TFTC complex
124536531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
GtgE
Motif
Other DBs
NCBI-GeneID:
124536531
NCBI-ProteinID:
XP_046969045
LinkDB
All DBs
Position
16:5471488..5480093
Genome browser
AA seq
1217 aa
AA seq
DB search
MYLYNLTLQGSTAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKVEIFG
VVRSMMAFRLTGGTKDYIVVGSDSGRIVILEYIPAKNILEKVHQETFGKSGCRRIVPGQY
LAIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENP
MFACLEIDYEEADSDPSGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPG
GNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITIETDEDMVTEIKLKYFDTVPVATAMCVLKTGFLFVACEFGNHYLYQ
IAHLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDELDSLSPILACHVADLTGEDT
PQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRHKDDEFDSYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCHALGSDALVQVYPDGIRHIRADKRVNEWKAPG
KKSIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKLSCDVSCMALGSVATGEQ
RAWFLAVGLIDNTVRIISLDPADCLAPRSMQALPASPESLCIVDQPFESGAKSALHLNIG
LSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQSAEAVLAVSSRTWLGYQYQNR
FHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLRILALEKLGAVFNQTYQPLEYTPRKF
IINSDNNQIIILETDHNSYTEEMKKQRRVQMAQEMREAAAGGGPEEQQLANEMADAFLSD
VLPENVFSSPKAGAGMWASQIRVVDMSVSGAQPSTVLKLPLEQNEAAVSLCALRWAAHAE
HAALHLVVGVAKDLLLSPRSCTEGSLHVYKVYNTGKLELVHKTPIDEYPGALAAFNGKLL
AGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIKTVRQRIFVSDVQESIFCVKYKKRENQ
LIIFADDTNPRWITNTCILDYDTVAMSDKFGNIAVMRLPQSITDDVDEDPTGNKALWDRG
LLNGASQKGDIVVNFHVGETVTSLQRATLIPGGSEALLYATVSGSLGVFLPFTSREDHDF
FQHLEMHMRSENSPLCGRDHLSYRSYYYPVKNVIDGDMCEQFNSLDPAKQKAIAGDLERT
PAEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgtataaccttacactacaaggctctacggccatcacgcatgccgtgcatggt
aatttttctggcactaagcagcaagaaataattatatcgcgagggaaaacactggagtta
ctacgacctgacccgaacactggaaaagtccataccctcatgaaagtagaaatattcggc
gttgtccggtcgatgatggcattccggttaaccggtggcactaaagattacattgttgtg
gggtctgactcggggcgaatcgttatattggaatatataccagctaaaaatatacttgaa
aaagtacatcaggaaacatttggaaagtctggctgcagaagaatagtaccaggacagtat
ctggctattgatcctaaaggacgagctgtgatgatcggtgcaattgaaaagcaaaagcta
gtgtacattcttaatagagatgctgaagcaagattaacaatttcttctcctttggaagct
cacaaatcaaatacattagtttatcacatggtgggagtggatgttggatttgaaaatcct
atgtttgcctgcttagaaattgattacgaagaagcagactctgatccttcaggtgaagca
gctcaaaagacacaacaaactttaacattctacgagttagatttgggactgaatcatgtt
gtaagaaaatattcagaacccttggaagaacatgctaatttccttataaccgtaccgggt
ggcaatgatggcccatcaggtgtacttatctgctcagaaaactatttgacgtataagaat
ttaggtgaccagcatgacataagatgccctattccacgacgtcgtaatgatttggatgac
ccagagagaggaatgatttttgtatgttccgctacacacaaaacaaaatccatgttcttt
ttcttggcgcagacagaacagggagatatttttaaaattacgattgagactgacgaagac
atggtaacagagataaaactgaaatattttgatacagtccctgtagcaacagctatgtgt
gttttgaagactggctttctatttgtggcctgtgaatttggcaaccactatttataccaa
atagcccacctgggtgatgaagatgatgaaccagaattcagttcggccatgccacttgaa
gagggtgatacattcttctttgctccacgacctctgagaaatttagttctcgttgatgaa
cttgattcactttcccctatattggcttgccatgtagctgatttgacaggtgaagatacc
ccacaagtttatttggcttgtggtagagggccccggtcatctctgagggctttaagacat
ggtttagaagtagctgaaatggcagtttcagaactgccaggatcccctaatgcagtatgg
actgtacgccgccataaagacgatgagtttgattcatacatcatagtatcattcgtaaat
gctacacttgtcctctctatcggtgaaactgttgaagaagtgactgactctggttttttg
ggaaccacgcctacgcttagctgccatgcactaggtagcgatgccttggtacaagtttac
ccagatggtataagacacatacgcgccgataaacgagtcaacgaatggaaagcccctggc
aaaaagtcgattgtcaaatgtgctgtgaatcagagacaagttgttattgcgttaactggc
ggagaattagtctactttgaaatggatcctacagggcaattgaatgaatacacagaaaga
aaaaaattgtcatgtgatgtttcttgcatggcattaggatctgtggcaactggagaacaa
agagcttggttcttagctgttggccttatcgacaacactgtcagaataatctcattagat
ccagctgattgcttagcccctcgctcaatgcaagctttgccagccagtccagagtcatta
tgtattgttgaccaaccatttgaatcgggtgctaaatctgcattacatttgaatataggt
ttaagtaatggagtattactgcgaacaaccttagactctgtgagtggtgatttagcagat
actagaacaaggtaccttggatctcggcctgtgaaattattcaaagtcagagtacaatct
gctgaagcagtactagctgtgtcatctagaacatggctagggtaccagtaccagaatcgt
ttccatctcacaccactatcatatgaatgcctagaatatgctgcaggtttcagttctgaa
cagtgtacagagggcattgtagcaatctcttcaaacaccttaagaattttggccttagaa
aaattgggcgcagtattcaatcagacttaccaacccttggaatatacgccgagaaagttc
attatcaactctgacaataatcaaatcataatcttggagactgatcataattcatacact
gaagaaatgaagaagcagagaagagttcaaatggcacaagaaatgcgcgaagccgccgcc
ggtggtgggccggaagagcaacagctagcaaacgaaatggccgatgccttcctttcagat
gttttacctgaaaatgtattctcttcacctaaagctggagcaggtatgtgggcatcacaa
atccgcgtcgttgacatgagcgtgagcggcgcacagccaagcacagtgctgaaactgccg
ctggaacagaacgaggcggccgtgtcgctgtgcgcgctgcgctgggccgcgcacgccgag
cacgccgcgctgcatctcgtagtgggcgtcgccaaagacctactactctcgccgcgctct
tgcacggaagggagtttacacgtgtacaaggtatataacaccggtaaattggaactcgtt
cacaaaacaccgattgacgaataccctggggcattggcagcattcaatggcaaactgtta
gctggtgtggggcgcatgttgagactttacgacatcggtagaagaaaattgttgcgcaaa
tgcgaaaaccgacacattccaaatctcattgccgatattaagaccgtcagacaaagaata
tttgtatcagatgtgcaagaatccatattttgtgttaaatacaaaaaaagagaaaaccaa
cttataatatttgcagatgacacaaatccgagatggattacgaatacctgcattttagat
tacgatacagtagccatgtctgataaatttggtaatatagctgttatgcgattacctcag
tcgatcacagatgatgtagatgaagatccaacaggaaataaagcattatgggatagaggt
ttactcaatggtgcttcgcaaaagggagatattgtagtcaatttccatgtaggcgaaact
gttacgtcccttcagcgtgcaactttaatccctggtggctctgaagcgctgctttacgct
actgtcagtggatcactgggtgtatttctaccattcacctcaagagaagaccatgacttc
ttccaacatttagaaatgcatatgagaagtgaaaactcacccctatgtggtcgtgatcat
ttgtcctatagaagttattattacccagttaagaatgtcatcgatggagatatgtgcgag
cagttcaactcgttggatcctgcgaagcagaaagcgattgcgggagacctagaacgtaca
cctgcagaagtttctaaaaaactagaagatattagaactagatatgcgttttag
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