Vanessa cardui (painted lady): 124536709
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Entry
124536709 CDS
T09161
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124536709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124536709
03041 Spliceosome [BR:
vcd03041
]
124536709
03009 Ribosome biogenesis [BR:
vcd03009
]
124536709
03016 Transfer RNA biogenesis [BR:
vcd03016
]
124536709
Enzymes [BR:
vcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124536709
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124536709
Spliceosome [BR:
vcd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124536709
Complex C
U4/U6.U5 tri-SnRNP related factors
124536709
Ribosome biogenesis [BR:
vcd03009
]
Eukaryotic type
Pre-60S particles
Helicases
124536709
Transfer RNA biogenesis [BR:
vcd03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124536709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
ACBP4_C
Motif
Other DBs
NCBI-GeneID:
124536709
NCBI-ProteinID:
XP_046969272
LinkDB
All DBs
Position
1:5040440..5057244
Genome browser
AA seq
1028 aa
AA seq
DB search
MADVNSIFDCFDDPMQNEATTQLPNIENKEKATNDEEPSSSNKRPHEEVEYADTKKPKQE
EEVEEDLMSDINVEMLSSRIVIHTLETHEGCTHEVAIPPNHEYAPLAQTSTEPAKQYSFI
LDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKY
REFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRD
KERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPLQHY
IFPAGGDGIHLVVDEKGLFKEDNFNTAMTVLSNAGEAGRGDQRGRKGGPRGNSNTNIFNI
VKMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLSEEDRK
LPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPARTVV
FTNCQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKVTPSVVKAMVQGKAD
PINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKMKAKQKQLERVSV
SDEGAVAAYCHTRAQLQLLAAQFRAFITRPDYLKPFLQPGRLVKVKTEKYEYDWGIIVNF
RHKTGKGKKPQDENPLTADTVIIVDILLHVKKSKPDDADTNMPCPPGETGDVEVVPVLHT
LIYQISSLRVYYPKDLRPPDNRKSVLKTIGEVKKRFPEGPPLLNPIKDMKIDDPVFKECV
DRIKILEERLYSHPLHKDKNRGALTAAYENKQEIYEELMSVKSELKKAKSILQMDELKKR
KRVLRRLGYCTLSDVIELKGRIACELSSADELLLTELIFNGVFNSLSAAQSAALVSCFVC
DEASSQASAAGEELRAVLRQLQEYARRIAKVSIDAKMDLDEDEYVGKFKCTLMDVVLAWA
KGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKMLKRDI
VFAASLYM
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgtaaatagtatttttgattgttttgacgatccaatgcaaaatgaagctact
acacaattacctaatatagaaaacaaggaaaaagcgacaaacgatgaagaaccgtcttca
agtaataaacgtccacacgaagaagttgaatatgcggacactaaaaaaccaaaacaagaa
gaggaggttgaagaggacctaatgagtgacataaatgtggagatgttaagctcaagaata
gtaattcacactctagagacacatgagggctgtacacatgaagtagctatacccccaaac
catgaatatgcacctttagcacagacctcaacggagcctgctaagcaatatagcttcatt
ctagatcctttccaaaaagaagcaattttatgtattgacaatttacaatccgtcctggtg
tcagctcatacatcagctggaaaaactgttgtcgcagagtatgcaattgcattatcgtta
aaaaataagcaaagagttatatacacaacaccaataaaggctctttctaaccagaagtat
cgagagttttcagaagaattccatgatgtgggtcttataactggtgatgtcactatcaac
ccatcggcgtcatgtcttattatgaccactgagattctgagaaatatgttgtatagagga
tcagaaattatgcgagaagttggttgggtagtgtttgatgagattcattatatgagagac
aaagagagaggtgttgtatgggaagaaacattgattttgttacctgataatgttcactac
gtatttttatcggctacgatccccaatgcgaggcaatttgctgagtgggtttgtcgcctg
cactctcagccgtgtcacgtggtctacacagagtacagaccgacaccgcttcaacactat
atattcccagccggaggagatggcatacatcttgttgtggacgaaaagggtttgttcaag
gaagacaacttcaacacagccatgacggtgctgagcaacgcgggcgaggcgggcaggggc
gaccagcgcgggcgcaagggcggcccgcgcggcaacagcaacacaaacatcttcaacatc
gtcaagatgatcatggagaggaacttcgcgcccgtcatcatcttcagcttcagcaagaag
gactgcgagctgtacgccatgcagatggccaagttggattttaatacgatcgaagaaaag
aaactagtggacgaagtgttcaacaatgcgatggacgtgctgtcggaggaggatcgcaag
ctgccgcaagtcgagaacgtgataccgctgctgcggcgcggcatcggcatacaccacggc
ggcttgctgcccatactgaaggaaaccattgagatattgttcggcttgggacttataaag
gcgctgttcgcgacggaaacattcgccatgggattgaacatgcccgccagaacagttgtc
ttcactaattgtcaaaagtttgacggcaaggactttcgatttataacgtcgggagagtac
atccagatgtccggtcgcgcgggtcgtcgtggtcttgacgacaagggcatcgtgatcctc
atgatcgaccagaaggtcacgcccagcgtcgtcaaggctatggtgcagggcaaggcagat
cccatcaactccgccttccatcttacttacaacatggtcttgaacttgctgcgagtggaa
gaaatcaatcccgaatacatgttggagaggagtttcttccagtttcaaaaccaagcagcg
attccggatctaattgataagatgaaggcgaagcagaagcagctggagcgcgtgtcggtg
tcggacgagggcgccgtggcggcgtactgccacacgcgcgcgcagctgcagctgctggcc
gcgcagttccgcgccttcatcacgcgccccgactacctcaagcccttcctgcagcccgga
cgcctcgtcaaggtgaaaacagaaaaatacgaatacgactggggaattatcgtaaacttt
agacataaaacgggcaagggcaagaagccacaagacgagaacccgctgaccgcggataca
gttatcatagtcgatattttactccacgtgaagaaaagcaaaccggacgacgccgacacg
aacatgccctgtccgccgggggagacaggagatgtagaagtggtgcccgttcttcacact
cttatataccagatcagttcactccgcgtctactaccccaaggaccttcgacctccagac
aataggaaatccgttctcaagacgataggtgaagtcaagaagcgcttcccagaagggcct
ccgttgctcaatcctataaaagatatgaaaattgacgatcccgtttttaaagaatgcgtg
gatagaattaaaattttagaagaaagactgtactcccatcctctacataaagacaagaac
cgtggagcattgaccgcagcctatgaaaataaacaggaaatatacgaagaattaatgtcg
gttaaatcggaactgaaaaaagcgaaaagtatattacaaatggacgaactaaagaaaagg
aaacgagtgcttagaagattagggtattgcacactatcagacgttatagaattaaaaggc
agaatagcttgtgaattgagcagcgcggacgagctgctactgacggagctgatcttcaac
ggcgtgttcaactctctgagcgcggcgcagagcgcggcgctggtgagctgcttcgtgtgc
gacgaggcttcgtcgcaggcctccgccgccggagaggagctgcgagccgtactgcgacag
ctgcaggaatacgcgcgtcgcatagccaaggtgtcgatcgacgccaagatggacctggac
gaggacgagtacgtcggcaagttcaagtgcacgctcatggacgtggtgctcgcgtgggcc
aagggcgcctccttcctgcagatctgcaagatgacagacgtcttcgaaggttcaataatc
cgttgcatgcgtcgcctggaggaggtgctccgtcagctgtgccaggccgccaagaacatc
ggcaacaccgacctcgagaacaagttcagcgacgccatcaagatgctcaaacgagacatc
gtgttcgctgccagcttgtacatgtga
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