Vanessa cardui (painted lady): 124537109
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Entry
124537109 CDS
T09161
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124537109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124537109
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124537109
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
eIF2A
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_WDR11_2nd
Beta-prop_WDR41
Tricorn_2nd
Beta-prop_ACSF4
WD_LRWD1
Frtz
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
124537109
NCBI-ProteinID:
XP_046969793
LinkDB
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Position
17:complement(5982086..5985099)
Genome browser
AA seq
858 aa
AA seq
DB search
MDFGNPPPNMGMPPPGMGGPMGPPGRNNIRHNFRPFNYQMRFPPQGPLNMTQDDFDGKRL
RKSVMRKTVDYNSAIIKALECRVWQRDWRDRHALQPDAMYTPDLLPPPSYPDNPINAVTT
RFVKTATNKMRCPIFAVAWTPEGRRLITGASSGEFTLWNGLTFNFETILQAHDSPVRSMV
WSHGEGWMVTGDHSGFIKYWQSNMNNVKMYQAHKEAVRGISFSPSDAKIVTCSDDGTLRI
FDFYRCQEERILRGHGADVKCVQWHPTKALIVSGSKDNQQPIKLWDPKSGTALSTLHAHK
STVMDLKWNENGNWLITASRDHLLKLFDIRKLGTELQIFRGHKKEASSVVWHPNHEGLFC
SGGSDGSILFWNVGTDKEVGCIEGAHESIVWTMAWHPLGHILCSGSNDHTSKFWTRNRPG
DQMRDKYNLNTLPPGVQDDQDLEEPAAIPGMGPEDKVEIFSSDTDKVIPGLDLDTTFIPM
EFEKKVKKVPYSKPIPRNFQAQWNHGPTADDAATEALTQALVESVAGAVPLQQLNPTAIF
IYGKLIPVEPGSKLEKAISEGPISLKRYIATGEIEDLDDMMPHLEEDADDDNFPPFEYPT
QENNDDENQTADEENKDKNDYEKEDYFDNEMETSEQNQDDYNNYDNGPERNNMMPMGPMP
PMGLLRPPMNMRPPMPPHGPPMHSMHMPPPGMPPMGGMPPMGAMPPMGNMPPMNNMPPMG
NMNQRPPFSDNGFNKGHYESGYDSNQSYSQENDDYNEDGSYENNYEEENYNDNENGDNDN
YGRNQRWIGGFRGRGPDRGQLRGRGLDRGRGQDRGRGRGMNGFGGRIIRRGGPQRGTSWI
RRGVGANRQFRRGGKQPN
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggattttggaaaccctcctccgaatatggggatgcctccacccggcatgggtggccca
atgggcccacccggtcgtaacaacattcgccataactttaggcctttcaactatcaaatg
cgattcccgcctcagggtcccctaaatatgactcaagacgactttgatggtaaacgtttg
cgtaaatcagtaatgcgaaaaacggtagattataattctgcaataataaaggctttagaa
tgtcgcgtttggcagcgagactggcgggacaggcacgcgttgcaaccagatgctatgtat
actcctgacctattaccgccaccttcttatcctgataacccaataaatgctgttaccacc
cggtttgttaagactgctacgaataagatgaggtgtccgatctttgctgtggcatggaca
cccgaggggcgcagattaataacaggagcttcatctggagaatttactttatggaatgga
ttgacatttaattttgaaaccattttgcaagctcatgattcgccagttcggtcaatggtt
tggtctcatggtgaaggctggatggttactggtgatcattcaggttttatcaaatattgg
caaagtaacatgaacaatgtaaaaatgtatcaagctcataaagaagcagtaagaggcata
agttttagtcctagtgatgccaaaatagtcacttgttctgatgatggcacattgcgtata
tttgatttttatagatgtcaggaagaaagaatattaagaggacatggagcagatgttaaa
tgtgtgcagtggcatcccacaaaagctctcattgtctctggtagtaaagataatcaacaa
cctataaaattatgggatcccaaatctggaactgctttatcgactcttcatgctcataag
tctacagtgatggatttaaaatggaatgaaaatggtaactggctcataactgcatcccgt
gaccacttgttaaagttgtttgatattcgtaaacttggaactgaactacaaatatttaga
ggtcacaaaaaagaagcttctagtgttgtctggcacccaaaccatgagggattattctgt
tctgggggttctgatggttcaatattattttggaatgtaggtactgataaagaagtggga
tgtatagaaggtgcacatgaatcaatagtttggacaatggcatggcatcctcttggtcac
atcttatgttcaggatctaatgatcacacatcaaagttttggactcgtaatcgtccaggt
gatcaaatgagagacaaatataatcttaatacattacctcctggtgtgcaagatgatcaa
gatttggaagaaccagctgcaatacctggaatgggtcctgaagataaagttgaaatattc
tcttctgataccgataaagttattccaggtttagacttagacactacatttattcccatg
gaatttgaaaagaaggtgaagaaagtgccttacagtaaacctattccaagaaatttccaa
gctcaatggaatcatggtccaacagcagatgatgcggcaacagaagctttaacacaagct
ttagtggagtctgttgctggtgctgtgccactccaacagcttaaccctacagctattttt
atttatggtaaactcattccggtagaaccaggatcaaaacttgaaaaagctatttcagaa
ggtccaatatcattaaaaagatatatagctacaggtgaaattgaagatttagatgacatg
atgcctcacttggaagaggatgctgatgatgataacttccctccatttgaatatcccact
caagaaaataatgatgatgaaaatcaaacagcagatgaagaaaataaagataaaaatgat
tatgaaaaagaagattactttgataatgaaatggaaacaagtgaacaaaatcaagatgat
tacaataattacgacaatggacctgaaagaaataatatgatgccaatgggtccaatgcct
ccgatgggtttgttaaggcccccaatgaatatgagaccacctatgccccctcatggtcct
ccaatgcattctatgcatatgcctcctccaggaatgccaccaatgggaggaatgccacca
atgggtgcaatgcctccaatgggcaacatgccacccatgaacaacatgccaccaatgggc
aatatgaatcaacgtccacctttctctgacaatggatttaataaagggcattatgaaagt
ggatatgacagtaatcagtcatattcccaagagaatgatgattataatgaggatgggtct
tatgagaacaattatgaggaagagaactacaatgataatgaaaatggtgataatgataat
tatggaaggaatcagagatggattggtggtttcagaggcagaggcccagatagaggccaa
cttcgaggaagagggcttgatcgtggtaggggccaagatagaggcagaggtagaggtatg
aatggatttggtggccgcataattcggagaggtggccctcaacgtggcacatcttggatt
cgtcgaggtgttggtgccaataggcagtttagaagaggtggaaaacaacctaattag
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