Vanessa cardui (painted lady): 124537125
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Entry
124537125 CDS
T09161
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124537125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124537125
03012 Translation factors [BR:
vcd03012
]
124537125
Enzymes [BR:
vcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124537125
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124537125
Translation factors [BR:
vcd03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124537125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
HA2_N
HA2_C
AAA_19
nSTAND3
AAA_22
Cas3-like_C_2
Rad17
ABC_tran
RsgA_GTPase
AAA_11
Motif
Other DBs
NCBI-GeneID:
124537125
NCBI-ProteinID:
XP_046969816
LinkDB
All DBs
Position
17:5680243..5690834
Genome browser
AA seq
1034 aa
AA seq
DB search
MSRGYNNWSRPRGSRGRQWGGQRQRMFPPGLRGAEIGMYFRGLQVKKQKKEIVINLKIPR
SVLNTVDTNLKSIAKIAARQNIFLPQIRKSDSFKNNTKIKEIKTAVSDESSADECNEDNE
QKAGPSRVTDFIPVKQEVESDYGSKTKISSLRPLSNYKYGYDDIITGSFDEKLDECLAKG
ISINSVNSDTASINTALFVEYEDMIEKSSYKSMLTFREKLPTYIKAKEVLNAIRNNQVIV
ISGETGCGKSTQVPQLILDEAICAKRGANVKILVTQPRRIAASSLAIRVAKERGESLGNS
VGYAVKLEKVEERSRGSIQYCTTGILLAELEVNQGLSEYSHIILDEVHERDVHVDLSMCM
LKQVLQKRKDLKLILMSATLDAESLSGYFDNCPLMHIEGLAYPVQDIYLEDILEFTRFKL
PPEKVKQQQPKWMKHRRNRKADEMEKDIKYKAEIGQWLESKKKHLSHDVYRTLQDSRIED
LNLELIVELLIYICKGKEGAILVFLPGIGDITKLMRLMDESKCFPRSFHEIYPLHSKLPT
LEQHRIFEKPKGNIRKIIIATNIAETSITIDDIVYVVDCGKIKMSGLNIEQNVSTLKTEW
ISQANLRQRRGRAGRCQPGICYHLLTSFRAQKIEERLLPELQRSNLLEPVLMIKKLRLGL
AADALKLVPSPPAETTIQWAVKHLQKCGALDDSETLTALGWHLARLPVHPAAGKLLLFGA
LFGCLDRAASVAAVWGFKDPFLLVIGKEREVDAVKRNMALGEPSDHIAISEAILEWESRS
HSSRRSFAYDNYLSNNTLELLSEMKKQLGNNLHQMGFLPSGNIRSSWENRNAHNLSLFKA
IVAASLYPNIAYVKWSNMNNIRKPARFVARSPEDGKLSIHPSSVMAGVKGGVPTQICNNP
GANWLVYWLKQRTTDLFLLDVTLIYTLPLLFFGEFVVEDDTADPESCLISISTTKVRCQR
ESANKLFELRSFLDKVLASKITDSNTQSLYNNEFEEQVLNTVIQLITAEDEQTEYLGDDL
PDSDNSESETERKW
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcggttataacaactggtccaggcccagaggatcaagaggaagacaatggggt
ggtcaaagacagagaatgtttcctcccggtttacgaggtgcagagattggaatgtatttc
agaggacttcaagtgaagaaacagaaaaaggagatagtgataaacctaaaaataccgagg
tcggtattaaataccgtggacacaaatcttaagtcaatagcaaaaattgctgctcgccag
aatatttttttacctcaaattaggaaatcagacagtttcaaaaataatacaaaaatcaaa
gaaataaaaactgcagtatctgatgaatcgtctgcagatgaatgtaatgaagataatgaa
caaaaggctggtccttctagagttacagattttattccagtcaagcaggaagtagaaagt
gattacggttctaaaacaaaaattagttctttaagaccactaagtaattataaatatggt
tacgatgatattataactggatcgtttgatgagaaactggacgaatgcctagcgaaagga
attagtattaattcagtaaattctgacactgcgagtattaatacggcattatttgttgaa
tatgaagacatgatagaaaaaagtagttataaaagtatgttgacgttccgagagaaatta
ccaacttatatcaaagcaaaggaggtattgaatgcaattcgaaacaaccaagtaattgtt
atcagtggggaaacaggttgcgggaagtcaactcaagtacctcaactaatattagatgaa
gcaatatgtgccaaacgaggtgccaatgtgaaaattttagttacacagccgaggcgcata
gccgcgtcgtccttagctatcagagttgccaaagaaagaggcgagagcctcggtaattca
gtaggttatgcagtaaaattggaaaaggtcgaggaaagatctcgtgggagtattcagtat
tgtactacaggtatacttttagctgaattggaagtgaaccagggcttatctgagtatagt
cacattatattagatgaagtgcacgaaagagatgtacacgtagacttgtctatgtgtatg
ctgaaacaagttctacaaaagcgtaaagatttgaaacttattcttatgagcgcgacgctc
gacgccgaaagtttgtcgggctatttcgacaattgccctctaatgcatatagaagggcta
gcatatccagttcaagatatttatttagaagatatattagaattcactagattcaaatta
ccaccagaaaaagtcaagcaacaacaaccgaaatggatgaaacacaggagaaatagaaag
gctgatgaaatggaaaaggatataaaatacaaagccgaaattggtcaatggttagaatca
aagaagaaacatttgagccacgatgtctatagaactctccaagattctagaattgaagat
ttaaatttggaattgatcgtggagcttctgatttacatatgcaaaggaaaagaaggagcg
atattagtgtttctaccaggtattggtgatatcactaagctcatgagattaatggatgag
agtaaatgttttccccgttcgtttcatgaaatatatcccctacattcaaagttaccaacg
ctagaacagcacagaatattcgagaaaccaaagggaaatatcaggaaaattataatagcg
actaacattgccgagacgtcgataacgattgatgatatcgtgtatgtggtggattgtggc
aagattaaaatgagcggtctgaatattgaacagaatgtatcgacactcaaaaccgaatgg
atttctcaagccaatctgcgacagagacgaggtcgcgctggccgttgccagccgggtata
tgttaccatttactaacatcgttccgagcacaaaaaatcgaagaaagactcctaccagaa
ctacagaggagcaacctactggaaccggtactgatgattaagaagcttcggctaggattg
gcagcggacgccttgaagttagtgccatcaccccccgccgaaacgacgatccagtgggca
gtgaaacatttgcaaaaatgcggtgctttggatgacagtgaaacgttgacagctctgggc
tggcatttggctcgtttgcccgtgcacccggctgcggggaaactattgctctttggagcc
ctcttcggttgtctcgatcgagccgccagcgtcgctgcagtgtggggatttaaagacccc
ttcctgcttgttattgggaaagaaagagaagtggacgctgtgaaacgaaatatggcactc
ggggaacccagtgaccacatcgcaatatctgaagcgatcctcgaatgggaaagccgctca
cactcctcgaggcggtcgttcgcatatgataattatctttccaacaataccttggaattg
ctatccgaaatgaagaaacagctgggtaacaatcttcatcaaatgggattcctgccatcg
ggcaatataagatcgtcatgggaaaatcgaaatgctcataacttaagtttatttaaagct
atagttgccgcgtctctgtacccaaatatagcttatgtcaaatggtcgaacatgaacaat
atacgcaagccggcacgattcgtagcacgcagtcccgaagacggaaagttatcaatacat
ccaagtagcgtaatggcgggcgttaaaggcggcgtaccaacccagatatgtaacaacccc
ggcgctaactggctcgtctattggttgaagcagaggacaactgacctcttccttttggat
gtcactttgatatacacattacctttgttatttttcggtgaatttgttgttgaagatgat
accgctgatcccgagagctgtctaatctcaatatctactaccaaagtccgttgccaaaga
gaaagtgctaataaacttttcgaattacgaagctttttagacaaagtcttagcatcgaag
attacagattcaaatactcaatcactctataataatgaatttgaagagcaagtgctcaat
actgttattcaactgattacagctgaagatgaacaaacagagtatttaggtgacgattta
ccagattcagataattctgaaagtgaaacagaaaggaaatggtag
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